RNA id: TU248130


Basic Information

Item Value
RNA id TU248130
length 464
lncRNA type intronic
GC content 0.38
exon number 1
gene id G217777
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 4120012 ~ 4120475 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGGTTCCTGGCAAGTTTACCCAATGACCTTTCCACTGATTCTCACCTCTATTAAAGATTTATACATTGAATTATTTCACCCAGTGGAACTTCATACTATGATAAACAGTAACTACCCATTGCTAGcagtatttattttgttttattgtcATCCATGTTTTGGAtggaattggaattggaattgtAGGTCGGCAGTGCAGTACAACGAAGACGTTAATGGATTGTAATGTTAGATGCTGTATTTGTTGTGCTTGACCCATTGTTCTCAACTAGGAGATAGAATCCCCttatatttcaaccctgcaaCAGGACAGATAGAAAGAAGTGTACAATACTTACTGCCAGTGCCCTCCCTATGTCTGTCTATTACCACTGTGAACAGAGGGGCCCAGGGCCCTCCCTATGTCTGTCTATTACCACTGTGAACAGAGGGACCCAGGGCCCTCCCTATGTCTGTCTATTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248122 lncRNA upstream 21366 4098328 ~ 4098646 (+) True G217769
TU248111 lncRNA upstream 28971 4090347 ~ 4091041 (+) True G217761
TU248091 lncRNA upstream 51523 4068259 ~ 4068489 (+) True G217742
TU248081 lncRNA upstream 61536 4058084 ~ 4058476 (+) True G217732
TU247945 lncRNA upstream 127216 3989336 ~ 3992796 (+) True G217619
TU248232 lncRNA downstream 174091 4294566 ~ 4294843 (+) True G217868
TU248242 lncRNA downstream 177081 4297556 ~ 4302856 (+) True G217870
TU248258 lncRNA downstream 204750 4325225 ~ 4325722 (+) True G217877
TU248295 lncRNA downstream 246649 4367124 ~ 4367347 (+) True G217903
TU248299 lncRNA downstream 250319 4370794 ~ 4371111 (+) True G217907
XM_036964020.1 mRNA upstream 94951 4022975 ~ 4025061 (+) True LOC110506729
XM_036966131.1 mRNA upstream 151747 3965458 ~ 3968265 (+) True LOC110520766
XM_036966134.1 mRNA upstream 195572 3916991 ~ 3924440 (+) True LOC118944821
LOC118964350 mRNA upstream 209975 3898226 ~ 3910037 (+) True LOC118964350
XM_036966123.1 mRNA upstream 245147 3854447 ~ 3874865 (+) True LOC110507394
XM_036966180.1 mRNA downstream 4810 4125285 ~ 4135152 (+) False LOC110512888
XM_036966201.1 mRNA downstream 4810 4125285 ~ 4135152 (+) False LOC110512888
XM_036966191.1 mRNA downstream 6250 4126725 ~ 4135152 (+) True LOC110512888
XM_036966224.1 mRNA downstream 262019 4382494 ~ 4448908 (+) False LOC110510956
XM_036966248.1 mRNA downstream 280282 4400757 ~ 4448006 (+) False LOC110510956
TU247417 other upstream 390856 3726530 ~ 3729156 (+) True LOC110507370
TU247379 other upstream 575534 3540799 ~ 3544478 (+) True LOC110520752
TU247383 other upstream 580106 3537839 ~ 3539906 (+) False LOC110520752
TU247382 other upstream 582753 3535177 ~ 3537259 (+) False LOC110520752
TU247395 other upstream 638476 3480316 ~ 3481536 (+) True G217146
TU248166 other downstream 22168 4142643 ~ 4143089 (+) True G217809
TU248238 other downstream 177081 4297556 ~ 4302856 (+) False G217870
TU248288 other downstream 331279 4451754 ~ 4452556 (+) True G217896
TU248792 other downstream 816622 4937097 ~ 4939894 (+) True G218309
TU248775 other downstream 824528 4945003 ~ 4961450 (+) True G218293

Expression Profile