RNA id: TU248232


Basic Information

Item Value
RNA id TU248232
length 238
lncRNA type antisense_over
GC content 0.48
exon number 2
gene id G217868
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 4294566 ~ 4294843 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAGCGCGGACAGCATGTCATCTACACAGTACagagaggtgacagacagacagcatgtcatctacacagtacagagaggtgacagacagacagcatgtcatctacacagtacagagaggtgacagacagacagcatgtcaTCTACACAGTACAGAGAGGTGACAGACAAGACAGCATGTCATCTACACAGTACagagaggtgacagacagacagcatgtcaactacacagtacagaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248130 lncRNA upstream 174091 4120012 ~ 4120475 (+) True G217777
TU248122 lncRNA upstream 195920 4098328 ~ 4098646 (+) True G217769
TU248111 lncRNA upstream 203525 4090347 ~ 4091041 (+) True G217761
TU248091 lncRNA upstream 226077 4068259 ~ 4068489 (+) True G217742
TU248081 lncRNA upstream 236090 4058084 ~ 4058476 (+) True G217732
TU248242 lncRNA downstream 2713 4297556 ~ 4302856 (+) True G217870
TU248258 lncRNA downstream 30382 4325225 ~ 4325722 (+) True G217877
TU248295 lncRNA downstream 72281 4367124 ~ 4367347 (+) True G217903
TU248299 lncRNA downstream 75951 4370794 ~ 4371111 (+) True G217907
TU248310 lncRNA downstream 89808 4384651 ~ 4385560 (+) True G217916
XM_036966163.1 mRNA upstream 159414 4096749 ~ 4135152 (+) False LOC110512888
XM_036966171.1 mRNA upstream 159414 4096788 ~ 4135152 (+) False LOC110512888
XM_036966188.1 mRNA upstream 159414 4096870 ~ 4135152 (+) False LOC110512888
XM_036966197.1 mRNA upstream 159414 4112801 ~ 4135152 (+) False LOC110512888
XM_036966180.1 mRNA upstream 159414 4125285 ~ 4135152 (+) False LOC110512888
XM_036966224.1 mRNA downstream 87651 4382494 ~ 4448908 (+) False LOC110510956
XM_036966248.1 mRNA downstream 105914 4400757 ~ 4448006 (+) False LOC110510956
XM_036966239.1 mRNA downstream 105914 4400757 ~ 4448017 (+) False LOC110510956
XM_036966252.1 mRNA downstream 105914 4400757 ~ 4448052 (+) False LOC110510956
XM_036966207.1 mRNA downstream 105914 4400757 ~ 4448908 (+) False LOC110510956
TU248166 other upstream 151477 4142643 ~ 4143089 (+) True G217809
TU247417 other upstream 565410 3726530 ~ 3729156 (+) True LOC110507370
TU247379 other upstream 750088 3540799 ~ 3544478 (+) True LOC110520752
TU247383 other upstream 754660 3537839 ~ 3539906 (+) False LOC110520752
TU247382 other upstream 757307 3535177 ~ 3537259 (+) False LOC110520752
TU248238 other downstream 2713 4297556 ~ 4302856 (+) False G217870
TU248288 other downstream 156911 4451754 ~ 4452556 (+) True G217896
TU248792 other downstream 642254 4937097 ~ 4939894 (+) True G218309
TU248775 other downstream 650160 4945003 ~ 4961450 (+) True G218293
TU248804 other downstream 723851 5018694 ~ 5021873 (+) False LOC110507709

Expression Profile