RNA id: TU248258


Basic Information

Item Value
RNA id TU248258
length 408
lncRNA type intronic
GC content 0.48
exon number 2
gene id G217877
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 4325225 ~ 4325722 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagagagagagagacagcaagagaaagacagacagcgagagagagagagagaaagagggctcTAGGTTCTGATATAGTTGAGGTGCTGAGTAGGAGGACACCTGCACTGATTGACAAGCTGCTAGAGGGCGAGTGAGGAGTTAAGgaatctgcgtcccaaatggcaccctattctgtacatagtgcactacttttgaccagagtccacgtagtgcactatatagggaatagggtgccatttgggacagacccGAAGAGTGAACATAGTGAGGGGGAACATTCCAGTCAGAAAGGCCTTGTTGTGTCAGTAGAACAAGTCAACCAGAAACGAATACAACTCAAGTCAAGATACTCCACACAGCACAGCAGCCTCAaggtttctcttctctctccacacaaCAACCATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248242 lncRNA upstream 22369 4297556 ~ 4302856 (+) True G217870
TU248232 lncRNA upstream 30382 4294566 ~ 4294843 (+) True G217868
TU248130 lncRNA upstream 204750 4120012 ~ 4120475 (+) True G217777
TU248122 lncRNA upstream 226579 4098328 ~ 4098646 (+) True G217769
TU248111 lncRNA upstream 234184 4090347 ~ 4091041 (+) True G217761
TU248295 lncRNA downstream 41402 4367124 ~ 4367347 (+) True G217903
TU248299 lncRNA downstream 45072 4370794 ~ 4371111 (+) True G217907
TU248310 lncRNA downstream 58929 4384651 ~ 4385560 (+) True G217916
TU248315 lncRNA downstream 64087 4389809 ~ 4390383 (+) True G217921
TU248322 lncRNA downstream 80788 4406510 ~ 4406927 (+) True G217927
XM_036966188.1 mRNA upstream 190073 4096870 ~ 4135152 (+) False LOC110512888
XM_036966224.1 mRNA downstream 56772 4382494 ~ 4448908 (+) False LOC110510956
XM_036966248.1 mRNA downstream 75035 4400757 ~ 4448006 (+) False LOC110510956
XM_036966239.1 mRNA downstream 75035 4400757 ~ 4448017 (+) False LOC110510956
XM_036966252.1 mRNA downstream 75035 4400757 ~ 4448052 (+) False LOC110510956
XM_036966207.1 mRNA downstream 75035 4400757 ~ 4448908 (+) False LOC110510956
TU248238 other upstream 22369 4297556 ~ 4302856 (+) False G217870
TU248166 other upstream 182136 4142643 ~ 4143089 (+) True G217809
TU247417 other upstream 596069 3726530 ~ 3729156 (+) True LOC110507370
TU247379 other upstream 780747 3540799 ~ 3544478 (+) True LOC110520752
TU247383 other upstream 785319 3537839 ~ 3539906 (+) False LOC110520752
TU248288 other downstream 126032 4451754 ~ 4452556 (+) True G217896
TU248792 other downstream 611375 4937097 ~ 4939894 (+) True G218309
TU248775 other downstream 619281 4945003 ~ 4961450 (+) True G218293
TU248804 other downstream 692972 5018694 ~ 5021873 (+) False LOC110507709
TU248783 other downstream 999705 5325427 ~ 5326009 (+) True G218301

Expression Profile