RNA id: TU248315


Basic Information

Item Value
RNA id TU248315
length 229
lncRNA type intronic
GC content 0.46
exon number 2
gene id G217921
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 4389809 ~ 4390383 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aactacagtaggtacccagactgtggtaggttgggttcagtaaggttgtagtgaacagagatgtactgtaactacagtaggtacccagactgtggtagggtgggttcagtaaggttgtagtgaacagaggagatgtactgtaactacagtaggtacccagactgtggtagggtgggttcagtaaggttgtagtgaacagaggagatgtactgtaactacagtaggtacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248310 lncRNA upstream 4249 4384651 ~ 4385560 (+) True G217916
TU248299 lncRNA upstream 18698 4370794 ~ 4371111 (+) True G217907
TU248295 lncRNA upstream 22462 4367124 ~ 4367347 (+) True G217903
TU248258 lncRNA upstream 64087 4325225 ~ 4325722 (+) True G217877
TU248242 lncRNA upstream 86953 4297556 ~ 4302856 (+) True G217870
TU248322 lncRNA downstream 16127 4406510 ~ 4406927 (+) True G217927
TU248327 lncRNA downstream 30151 4420534 ~ 4421294 (+) True G217932
TU248334 lncRNA downstream 52163 4442546 ~ 4443148 (+) True G217939
TU248335 lncRNA downstream 54903 4445286 ~ 4445672 (+) True G217940
TU248344 lncRNA downstream 103227 4493610 ~ 4493923 (+) True G217949
XM_036966188.1 mRNA upstream 254657 4096870 ~ 4135152 (+) False LOC110512888
XM_036966248.1 mRNA downstream 10374 4400757 ~ 4448006 (+) False LOC110510956
XM_036966239.1 mRNA downstream 10374 4400757 ~ 4448017 (+) False LOC110510956
XM_036966252.1 mRNA downstream 10374 4400757 ~ 4448052 (+) False LOC110510956
XM_036966207.1 mRNA downstream 10374 4400757 ~ 4448908 (+) False LOC110510956
XM_036966219.1 mRNA downstream 18042 4408425 ~ 4448908 (+) False LOC110510956
TU248238 other upstream 86953 4297556 ~ 4302856 (+) False G217870
TU248166 other upstream 246720 4142643 ~ 4143089 (+) True G217809
TU247417 other upstream 660653 3726530 ~ 3729156 (+) True LOC110507370
TU247379 other upstream 845331 3540799 ~ 3544478 (+) True LOC110520752
TU247383 other upstream 849903 3537839 ~ 3539906 (+) False LOC110520752
TU248288 other downstream 61371 4451754 ~ 4452556 (+) True G217896
TU248792 other downstream 546714 4937097 ~ 4939894 (+) True G218309
TU248775 other downstream 554620 4945003 ~ 4961450 (+) True G218293
TU248804 other downstream 628311 5018694 ~ 5021873 (+) False LOC110507709
TU248783 other downstream 935044 5325427 ~ 5326009 (+) True G218301

Expression Profile