RNA id: TU248344


Basic Information

Item Value
RNA id TU248344
length 314
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G217949
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 4493610 ~ 4493923 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTCAGGACACAATTAAAGAAGCCCTGGATCCAGCTAATCTTTGTCAGCGGTCAATTAAATCATCATCTCTAGCCAAAAGCTACGTCAAAAACTGACCTCATTCAAGTCAAGCAGATGAAAAGGCACAGAATTCAAATGTCACATTTTTGAATGAGTGTTAATCATTGTTGTTGTGTAAATTTGGATCACAAGCTGTCTCGAGCTATCTGGTTGGCTCCCGAGCTGTCTGGTTGGCTCCCGAGCTGTCTGGTTGGCTCCCGAGCTGTCTGGTTGGCTCCCGAGCTGTCTGGTTGGCTCCCGAGCTGTCTGGTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248335 lncRNA upstream 47938 4445286 ~ 4445672 (+) True G217940
TU248334 lncRNA upstream 50462 4442546 ~ 4443148 (+) True G217939
TU248327 lncRNA upstream 72316 4420534 ~ 4421294 (+) True G217932
TU248322 lncRNA upstream 86683 4406510 ~ 4406927 (+) True G217927
TU248315 lncRNA upstream 103227 4389809 ~ 4390383 (+) True G217921
TU248347 lncRNA downstream 4548 4498471 ~ 4500717 (+) False G217950
TU248348 lncRNA downstream 4548 4498471 ~ 4500466 (+) False G217950
TU248353 lncRNA downstream 4548 4498471 ~ 4500717 (+) True G217950
TU248549 lncRNA downstream 65586 4559509 ~ 4559920 (+) True G218107
TU248617 lncRNA downstream 174577 4668500 ~ 4668947 (+) True G218163
XM_036966224.1 mRNA upstream 44702 4382494 ~ 4448908 (+) False LOC110510956
XM_036966207.1 mRNA upstream 44702 4400757 ~ 4448908 (+) False LOC110510956
XM_036966219.1 mRNA upstream 44702 4408425 ~ 4448908 (+) False LOC110510956
XM_036966215.1 mRNA upstream 44702 4414552 ~ 4448908 (+) False LOC110510956
XM_036966233.1 mRNA upstream 44702 4429494 ~ 4448908 (+) True LOC110510956
XM_036966283.1 mRNA downstream 20400 4514323 ~ 4531079 (+) False LOC110518117
XM_036966287.1 mRNA downstream 20400 4514323 ~ 4531079 (+) False LOC110518117
XM_036966296.1 mRNA downstream 20400 4514323 ~ 4531079 (+) False LOC110518117
XM_036966301.1 mRNA downstream 20400 4514323 ~ 4531079 (+) False LOC110518117
XM_036966311.1 mRNA downstream 20400 4514323 ~ 4531079 (+) False LOC110518117
TU248288 other upstream 41054 4451754 ~ 4452556 (+) True G217896
TU248238 other upstream 190754 4297556 ~ 4302856 (+) False G217870
TU248166 other upstream 350521 4142643 ~ 4143089 (+) True G217809
TU247417 other upstream 764454 3726530 ~ 3729156 (+) True LOC110507370
TU247379 other upstream 949132 3540799 ~ 3544478 (+) True LOC110520752
TU248792 other downstream 443174 4937097 ~ 4939894 (+) True G218309
TU248775 other downstream 451080 4945003 ~ 4961450 (+) True G218293
TU248804 other downstream 524771 5018694 ~ 5021873 (+) False LOC110507709
TU248783 other downstream 831504 5325427 ~ 5326009 (+) True G218301
TU249003 other downstream 966169 5460092 ~ 5561271 (+) False G218465

Expression Profile