RNA id: TU248353


Basic Information

Item Value
RNA id TU248353
length 445
lncRNA type inter_gene
GC content 0.47
exon number 5
gene id G217950
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 4498471 ~ 4500717 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATGTCAGTGCTGTGACACAGAGGTGGGAGGTACATGATATGTAATGTCAGTGCTGTGACACAGAGGTGGGAGGTACATGATATGTAATGTCAGTGCTGTGACACAGAGGTGGGAGGTAGATGATATGTAATGTCAGTGTTGTGACACAGAGGTGGGAGGTACATGATATGTAATGTCAGTGCTGTGACACAGAGGTGGGAGGTACATGATATGTAATGTCAGTGCTGTGACACAGAGGTGGGAGGTAGATGATATGTAATGTCAGTGCTGTGACACAGAGGTGGGAGCTAGATGATATATAATGTCAGTGTTGTGTGACACAGAGGTGGGAGCTAGATGATATGTAATGTCAGTGCTGTGACACAGAGGTGGGAGGTAGATGATATGTAATGTCAGTGTTGTGTGACACAGATGTGGGAGGTAGATGATATGTAATGTCAGTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248344 lncRNA upstream 4548 4493610 ~ 4493923 (+) True G217949
TU248335 lncRNA upstream 52799 4445286 ~ 4445672 (+) True G217940
TU248334 lncRNA upstream 55323 4442546 ~ 4443148 (+) True G217939
TU248327 lncRNA upstream 77177 4420534 ~ 4421294 (+) True G217932
TU248322 lncRNA upstream 91544 4406510 ~ 4406927 (+) True G217927
TU248549 lncRNA downstream 58792 4559509 ~ 4559920 (+) True G218107
TU248617 lncRNA downstream 167783 4668500 ~ 4668947 (+) True G218163
TU248618 lncRNA downstream 169062 4669779 ~ 4670126 (+) True G218164
TU248638 lncRNA downstream 211569 4712286 ~ 4713406 (+) True G218181
TU248659 lncRNA downstream 230088 4730805 ~ 4733206 (+) True G218195
XM_036966207.1 mRNA upstream 49563 4400757 ~ 4448908 (+) False LOC110510956
XM_036966219.1 mRNA upstream 49563 4408425 ~ 4448908 (+) False LOC110510956
XM_036966215.1 mRNA upstream 49563 4414552 ~ 4448908 (+) False LOC110510956
XM_036966233.1 mRNA upstream 49563 4429494 ~ 4448908 (+) True LOC110510956
XM_036966252.1 mRNA upstream 50419 4400757 ~ 4448052 (+) False LOC110510956
XM_036966283.1 mRNA downstream 13606 4514323 ~ 4531079 (+) False LOC110518117
XM_036966287.1 mRNA downstream 13606 4514323 ~ 4531079 (+) False LOC110518117
XM_036966296.1 mRNA downstream 13606 4514323 ~ 4531079 (+) False LOC110518117
XM_036966301.1 mRNA downstream 13606 4514323 ~ 4531079 (+) False LOC110518117
XM_036966311.1 mRNA downstream 13606 4514323 ~ 4531079 (+) False LOC110518117
TU248288 other upstream 45915 4451754 ~ 4452556 (+) True G217896
TU248238 other upstream 195615 4297556 ~ 4302856 (+) False G217870
TU248166 other upstream 355382 4142643 ~ 4143089 (+) True G217809
TU247417 other upstream 769315 3726530 ~ 3729156 (+) True LOC110507370
TU247379 other upstream 953993 3540799 ~ 3544478 (+) True LOC110520752
TU248792 other downstream 436380 4937097 ~ 4939894 (+) True G218309
TU248775 other downstream 444286 4945003 ~ 4961450 (+) True G218293
TU248804 other downstream 517977 5018694 ~ 5021873 (+) False LOC110507709
TU248783 other downstream 824710 5325427 ~ 5326009 (+) True G218301
TU249003 other downstream 959375 5460092 ~ 5561271 (+) False G218465

Expression Profile