RNA id: TU248549


Basic Information

Item Value
RNA id TU248549
length 321
lncRNA type antisense_over
GC content 0.52
exon number 2
gene id G218107
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 4559509 ~ 4559920 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTCCAGGGTCATGGCCAGACCTTGCAGGCTCCTGGGATGCAGGGCTAGGCGTCGGGCCAGTAGTCTCTTATGGAAGGTGTTGAGGATGCTGCAGTGTTCCTCTATAGGCTGTACAGGTCCCAGTCTCTCTATGTTAATTACCTGAATACCTCCCAACACATGGCTGATCCTCTCCTTCAGCCACTCTGTCTGCTGGAGCAGGCTACAGTAGCTTGGGAGACTCACAAACAGCTaggacacTTTTGTCCATTGGTGATGAACATCCATTGTTCCCAGCATCACATGACCCGAGGCATTCATCCCTGATTGGTCAGTGAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248347 lncRNA upstream 58792 4498471 ~ 4500717 (+) False G217950
TU248353 lncRNA upstream 58792 4498471 ~ 4500717 (+) True G217950
TU248348 lncRNA upstream 59043 4498471 ~ 4500466 (+) False G217950
TU248344 lncRNA upstream 65586 4493610 ~ 4493923 (+) True G217949
TU248335 lncRNA upstream 113837 4445286 ~ 4445672 (+) True G217940
TU248617 lncRNA downstream 108580 4668500 ~ 4668947 (+) True G218163
TU248618 lncRNA downstream 109859 4669779 ~ 4670126 (+) True G218164
TU248638 lncRNA downstream 152366 4712286 ~ 4713406 (+) True G218181
TU248659 lncRNA downstream 170885 4730805 ~ 4733206 (+) True G218195
TU248664 lncRNA downstream 173845 4733765 ~ 4735372 (+) True G218196
XM_036966283.1 mRNA upstream 28430 4514323 ~ 4531079 (+) False LOC110518117
XM_036966287.1 mRNA upstream 28430 4514323 ~ 4531079 (+) False LOC110518117
XM_036966296.1 mRNA upstream 28430 4514323 ~ 4531079 (+) False LOC110518117
XM_036966301.1 mRNA upstream 28430 4514323 ~ 4531079 (+) False LOC110518117
XM_036966311.1 mRNA upstream 28430 4514323 ~ 4531079 (+) False LOC110518117
XM_036966393.1 mRNA downstream 91254 4651174 ~ 4697029 (+) False ano10a
XM_036966385.1 mRNA downstream 91263 4651183 ~ 4697029 (+) False ano10a
XM_036966399.1 mRNA downstream 91265 4651185 ~ 4697029 (+) False ano10a
XM_036966388.1 mRNA downstream 92713 4652633 ~ 4697029 (+) True ano10a
XM_036966463.1 mRNA downstream 204693 4764613 ~ 4769054 (+) False LOC118936613
TU248288 other upstream 106953 4451754 ~ 4452556 (+) True G217896
TU248238 other upstream 256653 4297556 ~ 4302856 (+) False G217870
TU248166 other upstream 416420 4142643 ~ 4143089 (+) True G217809
TU247417 other upstream 830353 3726530 ~ 3729156 (+) True LOC110507370
TU247379 other upstream 1015031 3540799 ~ 3544478 (+) True LOC110520752
TU248792 other downstream 377177 4937097 ~ 4939894 (+) True G218309
TU248775 other downstream 385083 4945003 ~ 4961450 (+) True G218293
TU248804 other downstream 458774 5018694 ~ 5021873 (+) False LOC110507709
TU248783 other downstream 765507 5325427 ~ 5326009 (+) True G218301
TU249003 other downstream 900172 5460092 ~ 5561271 (+) False G218465

Expression Profile