RNA id: TU248618


Basic Information

Item Value
RNA id TU248618
length 293
lncRNA type intronic
GC content 0.33
exon number 2
gene id G218164
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 4669779 ~ 4670126 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAGGCTGGCACTCTCACCTTTACATATTTATGGATCACAGTGTGTCCATGTGACGGAGGCTGGCACTCTCACCTTTACATATTTAGCCTTTTACTTCAGATTTCTATGATTAACcacgtgacaatgattttgagaaatgACAATTGTATTATTGAGATGAAACAGTTCCATGAAAATGTGCATATAAAATAATCCTAACTGTCACGCAGGtcggtagaaatggtaggatagATTGTAAACTTCCCCAAACTGGAAACTCAGGAGCTGCCTGTGTGCTTTACTATAACACACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248617 lncRNA upstream 832 4668500 ~ 4668947 (+) True G218163
TU248549 lncRNA upstream 109859 4559509 ~ 4559920 (+) True G218107
TU248347 lncRNA upstream 169062 4498471 ~ 4500717 (+) False G217950
TU248353 lncRNA upstream 169062 4498471 ~ 4500717 (+) True G217950
TU248348 lncRNA upstream 169313 4498471 ~ 4500466 (+) False G217950
TU248638 lncRNA downstream 42160 4712286 ~ 4713406 (+) True G218181
TU248659 lncRNA downstream 60679 4730805 ~ 4733206 (+) True G218195
TU248664 lncRNA downstream 63639 4733765 ~ 4735372 (+) True G218196
TU248686 lncRNA downstream 98882 4769008 ~ 4770261 (+) False LOC118936613
TU248687 lncRNA downstream 98882 4769008 ~ 4770261 (+) True LOC118936613
XM_036966314.1 mRNA upstream 138700 4514323 ~ 4531079 (+) False LOC110518117
XM_036966463.1 mRNA downstream 94487 4764613 ~ 4769054 (+) False LOC118936613
XM_036966456.1 mRNA downstream 94516 4764642 ~ 4769054 (+) False LOC118936613
XM_036966447.1 mRNA downstream 94520 4764646 ~ 4769054 (+) False LOC118936613
XM_036966433.1 mRNA downstream 94521 4764647 ~ 4768968 (+) False LOC118936613
XM_036966429.1 mRNA downstream 94521 4764647 ~ 4769054 (+) False LOC118936613
TU248288 other upstream 217223 4451754 ~ 4452556 (+) True G217896
TU248238 other upstream 366923 4297556 ~ 4302856 (+) False G217870
TU248166 other upstream 526690 4142643 ~ 4143089 (+) True G217809
TU247417 other upstream 940623 3726530 ~ 3729156 (+) True LOC110507370
TU247379 other upstream 1125301 3540799 ~ 3544478 (+) True LOC110520752
TU248792 other downstream 266971 4937097 ~ 4939894 (+) True G218309
TU248775 other downstream 274877 4945003 ~ 4961450 (+) True G218293
TU248804 other downstream 348568 5018694 ~ 5021873 (+) False LOC110507709
TU248783 other downstream 655301 5325427 ~ 5326009 (+) True G218301
TU249003 other downstream 789966 5460092 ~ 5561271 (+) False G218465

Expression Profile