RNA id: TU248762


Basic Information

Item Value
RNA id TU248762
length 616
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G218286
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 4915148 ~ 4922149 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGtagtgcaatgtgtgtgtgtgtgtgtatttgtgtgtgtgcatgcgtgcgtgtgtgtgtctgtggttggaCATGCGCCTGTGCCCTTTATCCGGGAACCAGACGGACACACTGATCTAGCATTTTGTACATCTAGGGAACATTGTTTGCCTCTGGAAATGTCTGCCAGGTTAGGTAACTTAATCACTGTCTGTTAAATCAATACAGTCACCATaattctccctgtctctccctgtctctccctgtctctctgtctctgtgtgtcttttattctttctttcattttttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctctctctctctctctctctctctctctctctctctctctctctctctctccctctttccctctctctctctcacatgctctctctttctcaggtcacaaatcttgctgctgtgatggcacactgtggtatttcacccagtagatatgggagttcatcaaattcgggtttgttttcaaattatttgtggatctgtgtaatctgagggaaatatgtgtctcttatatggtcatacattgggaaagaggttaggaagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248748 lncRNA upstream 21562 4893270 ~ 4893586 (+) True G218274
TU248730 lncRNA upstream 45586 4862592 ~ 4869562 (+) True G218259
TU248699 lncRNA upstream 135492 4779280 ~ 4779656 (+) True G218228
TU248686 lncRNA upstream 144887 4769008 ~ 4770261 (+) False LOC118936613
TU248687 lncRNA upstream 144887 4769008 ~ 4770261 (+) True LOC118936613
TU248788 lncRNA downstream 7438 4929587 ~ 4929806 (+) True G218306
TU248789 lncRNA downstream 11683 4933832 ~ 4934075 (+) True G218307
TU248782 lncRNA downstream 67255 4989404 ~ 4991140 (+) True G218300
TU248807 lncRNA downstream 101112 5023261 ~ 5023608 (+) True G218322
TU248803 lncRNA downstream 103267 5025416 ~ 5026838 (+) True LOC110507709
XM_036966468.1 mRNA upstream 80560 4829858 ~ 4834588 (+) True LOC118944843
XM_036966442.1 mRNA upstream 145853 4764647 ~ 4769295 (+) False LOC118936613
XM_036966429.1 mRNA upstream 146094 4764647 ~ 4769054 (+) False LOC118936613
XM_036966467.1 mRNA upstream 146094 4765154 ~ 4769054 (+) False LOC118936613
XM_036966433.1 mRNA upstream 146180 4764647 ~ 4768968 (+) False LOC118936613
XM_021587829.2 mRNA downstream 52898 4975047 ~ 4983487 (+) False LOC110507681
XM_021587838.2 mRNA downstream 52942 4975091 ~ 4983487 (+) True LOC110507681
XM_036966519.1 mRNA downstream 62556 4984705 ~ 4996809 (+) False LOC118936614
XM_036966521.1 mRNA downstream 62558 4984707 ~ 4996820 (+) False LOC118936614
XM_036966512.1 mRNA downstream 62561 4984710 ~ 4999197 (+) False LOC118936614
TU248288 other upstream 462592 4451754 ~ 4452556 (+) True G217896
TU248238 other upstream 612292 4297556 ~ 4302856 (+) False G217870
TU248166 other upstream 772059 4142643 ~ 4143089 (+) True G217809
TU247417 other upstream 1185992 3726530 ~ 3729156 (+) True LOC110507370
TU247379 other upstream 1370670 3540799 ~ 3544478 (+) True LOC110520752
TU248792 other downstream 14948 4937097 ~ 4939894 (+) True G218309
TU248775 other downstream 22854 4945003 ~ 4961450 (+) True G218293
TU248804 other downstream 96545 5018694 ~ 5021873 (+) False LOC110507709
TU248783 other downstream 403278 5325427 ~ 5326009 (+) True G218301
TU249003 other downstream 537943 5460092 ~ 5561271 (+) False G218465

Expression Profile