RNA id: TU248807



Basic Information


Item Value
RNA id TU248807
length 348
lncRNA type intronic
GC content 0.47
exon number 1
gene id G218322
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 5023261 ~ 5023608 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CCCTTCAGACACTTCCCTGTGTTACTGCCTGACACACCCTTCAGACACTTCCCTGTTGTTACTGCCTGACACCCCCTTCAGACACTTCCCTGTGTTACTGCCTGACACACCCTTCAGACACTTCCCTGTGTTACTGCCTGACACACCCTTCAGACACTTCCCTGTGTTACTGCCTGACGCACCCTTCAGACACTTCCCGTGTTACTGCCTGACACACCCTTCAGACACTTCCCCGTTGTTACTGCCTGACACACCCTTCAGACACTTCCCCGTTGTTACTGCCTGACACACCCTTCAGACACTTCCCTGTGTTACTGCCTGACACACCCTTCAGACACTTCCCTGTGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU248782 lncRNA upstream 32121 4989404 ~ 4991140 (+) True G218300
TU248789 lncRNA upstream 89186 4933832 ~ 4934075 (+) True G218307
TU248788 lncRNA upstream 93455 4929587 ~ 4929806 (+) True G218306
TU248762 lncRNA upstream 101112 4915148 ~ 4922149 (+) True G218286
TU248748 lncRNA upstream 129675 4893270 ~ 4893586 (+) True G218274
TU248803 lncRNA downstream 1808 5025416 ~ 5026838 (+) True LOC110507709
TU248813 lncRNA downstream 19292 5042900 ~ 5043641 (+) False G218325
TU248815 lncRNA downstream 19292 5042900 ~ 5044159 (+) True G218325
TU248832 lncRNA downstream 54504 5078112 ~ 5080045 (+) True G218338
TU248834 lncRNA downstream 55405 5079013 ~ 5081026 (+) True G218339
XM_036966546.1 mRNA upstream 5392 4999319 ~ 5017869 (+) True LOC110516306
XM_036966512.1 mRNA upstream 24064 4984710 ~ 4999197 (+) False LOC118936614
XM_036966521.1 mRNA upstream 26441 4984707 ~ 4996820 (+) False LOC118936614
XM_036966519.1 mRNA upstream 26452 4984705 ~ 4996809 (+) False LOC118936614
XM_036966525.1 mRNA upstream 26457 4984712 ~ 4996804 (+) True LOC118936614
XM_036966562.1 mRNA downstream 4185 5027793 ~ 5039155 (+) False LOC110507710
XM_036966571.1 mRNA downstream 5981 5029589 ~ 5037972 (+) False LOC110507710
XM_036966568.1 mRNA downstream 6033 5029641 ~ 5037972 (+) True LOC110507710
XM_036966585.1 mRNA downstream 32929 5056537 ~ 5150464 (+) True LOC110520779
XM_036966600.1 mRNA downstream 290024 5313632 ~ 5318428 (+) True zgc:153896
TU248804 other upstream 1388 5018694 ~ 5021873 (+) False LOC110507709
TU248775 other upstream 61811 4945003 ~ 4961450 (+) True G218293
TU248792 other upstream 83367 4937097 ~ 4939894 (+) True G218309
TU248288 other upstream 570705 4451754 ~ 4452556 (+) True G217896
TU248238 other upstream 720405 4297556 ~ 4302856 (+) False G217870
TU248783 other downstream 301819 5325427 ~ 5326009 (+) True G218301
TU249003 other downstream 436484 5460092 ~ 5561271 (+) False G218465
TU249020 other downstream 509407 5533015 ~ 5626512 (+) False LOC110535491
TU249057 other downstream 520322 5543930 ~ 5633481 (+) False G218487
TU249058 other downstream 520322 5543930 ~ 5633481 (+) False G218487

Expression Profile