RNA id: TU248815


Basic Information

Item Value
RNA id TU248815
length 1260
lncRNA type antisense_over
GC content 0.36
exon number 1
gene id G218325
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 5042900 ~ 5044159 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTCGGAATGTTAACTGTATTTCAGGAAAAATCAAGAGATTGCACAAATCATTTCTAATGAACATGAGTTTTGGTCTAACAACAACCATGATAAAGATGGGAAAGAAACTTAAATGCCAACAGACTCAAGTTACTGACGTTACCAATGTACATTGTTCCAGAAACTTCAAGGCAGCAGTCATTCTGTTGGGCTGAGAATGTACTCAGTATTACAAGCTCTACCAAAGATAGGAAAGCCACCAAGCAATATGCAAAGTCCCACCTTCAGCATTAAGTCAACTTTAAGCCCAGTGTATAAAACAGATAAGGTATTAGTGAAGGGACAACATACAACATGTACAACACCATCCATACGCCATATGTTCTGCTATAGGATAACGGCCTAGGAAATCACATAAGAtacaatatttaaaaaacattcaATTTCAGAGTTTTTCCCCGTATTGACACACTTAGCAAAAAAACTACAGAGTGACAAGTTATTCACAACAGATTGTGTATAATAAGCACATCAGAAATACAGTTGTGTACAGGAAACAAACTTTCATTTCTACTGCACGATTTAAATCAGATATTTAAAACTCCCACCTGGTTTCAGAATCGTGTGGATGTCATGTGGGACACAAGCCAGCTTGGAGTGCACGTCGCCTACAACAAGCTCAAGTGGGAGGCCATATAGAAATTACAAGGGGAATGCACAGTGAAATGGTTGGAATTTTCCATTCTGATCAAGGGGGTGGACATCCCCCCCCGACAAGAGAACAAACTACCTTATGGAATGTTCCTTCGTTGCAGTTGATTTAATGAGTGGCATTCCCGAGTAATTCCAGGACAGATCACTGGAAAGCCCCGTAACGGTCAGGGTGTTTcgaatttcaacaacaacaacccctGTTACTAACAGACTCTTCCTGCTGACTAATAGTTAGGGGTTTTCAGAGTAGGTGCTAGTAAATTGTGTATCACAGTGACCAGCTACAGGTAACTGCTCAAATAAAAGGAAACACCAGTAAATGAGGGTACTTATTGGCAGCTCTTATGGTGTGGAGGtgcattttcctggcatggtttaggtcCACTCAACCCCATATAGGACAAGGTCAACTCCAGTGAATACACAGCTATTCTGAGTGATCACCTGCTACCTGTAGGGTGAAACAGATCTACCTTGATGGGAGTGGTCTCTTCCAGGATGACAATgaccccatccacagggcacgagtggtcacaaTGGTTTGATGAGTATGAAAactatgtaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248803 lncRNA upstream 16062 5025416 ~ 5026838 (+) True LOC110507709
TU248807 lncRNA upstream 19292 5023261 ~ 5023608 (+) True G218322
TU248782 lncRNA upstream 51760 4989404 ~ 4991140 (+) True G218300
TU248789 lncRNA upstream 108825 4933832 ~ 4934075 (+) True G218307
TU248788 lncRNA upstream 113094 4929587 ~ 4929806 (+) True G218306
TU248832 lncRNA downstream 33953 5078112 ~ 5080045 (+) True G218338
TU248834 lncRNA downstream 34854 5079013 ~ 5081026 (+) True G218339
TU248843 lncRNA downstream 62644 5106803 ~ 5107019 (+) True G218348
TU248846 lncRNA downstream 69111 5113270 ~ 5113529 (+) True G218351
TU248856 lncRNA downstream 102405 5146564 ~ 5146835 (+) True G218361
XM_036966562.1 mRNA upstream 3745 5027793 ~ 5039155 (+) False LOC110507710
XM_036966571.1 mRNA upstream 4928 5029589 ~ 5037972 (+) False LOC110507710
XM_036966568.1 mRNA upstream 4928 5029641 ~ 5037972 (+) True LOC110507710
XM_036966556.1 mRNA upstream 16060 5018589 ~ 5026840 (+) False LOC110507709
XM_036966546.1 mRNA upstream 25031 4999319 ~ 5017869 (+) True LOC110516306
XM_036966585.1 mRNA downstream 12378 5056537 ~ 5150464 (+) True LOC110520779
XM_036966600.1 mRNA downstream 269473 5313632 ~ 5318428 (+) True zgc:153896
XM_036966607.1 mRNA downstream 275179 5319338 ~ 5323900 (+) False LOC110535282
XM_036966609.1 mRNA downstream 275179 5319338 ~ 5323900 (+) False LOC110535282
XM_036966616.1 mRNA downstream 275179 5319338 ~ 5323900 (+) False LOC110535282
TU248804 other upstream 21027 5018694 ~ 5021873 (+) False LOC110507709
TU248775 other upstream 81450 4945003 ~ 4961450 (+) True G218293
TU248792 other upstream 103006 4937097 ~ 4939894 (+) True G218309
TU248288 other upstream 590344 4451754 ~ 4452556 (+) True G217896
TU248238 other upstream 740044 4297556 ~ 4302856 (+) False G217870
TU248783 other downstream 281268 5325427 ~ 5326009 (+) True G218301
TU249003 other downstream 415933 5460092 ~ 5561271 (+) False G218465
TU249020 other downstream 488856 5533015 ~ 5626512 (+) False LOC110535491
TU249057 other downstream 499771 5543930 ~ 5633481 (+) False G218487
TU249058 other downstream 499771 5543930 ~ 5633481 (+) False G218487

Expression Profile