RNA id: TU248834


Basic Information

Item Value
RNA id TU248834
length 564
lncRNA type intronic
GC content 0.49
exon number 2
gene id G218339
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 5079013 ~ 5081026 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtcctgttctccagtctttctcctactagattacagcaggtagggatcctgtcctccagtctttctcctactagattacagcaggtaggggtcctgtcctccagtctttctcctactagattacagcaggtaggggttctgtcctccagtctttctcctactacagtagattacagCTGTATgggtcctgtcctccagtctttatcctactagattacagcaggtaggggtcctgtcctccagtctttctcctactacagtagattacagcaggtaggggtcctgtcctccagtctttctcctactacagtagattacagcaggtaggggtcctgtcctccagtctttctcctactacagtagattacagcaggtaggggtcctgtcctccagtctttctcctactagattacagcaggtaggggttctgtcctccagtctttctcctacTAGATTACAGCTGTATgggtcctgtcctccagtctttctcctactagattacagcaggtaggggtcctgtcctccagtctttctcctactacagtagattacagcaggtagggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248815 lncRNA upstream 34854 5042900 ~ 5044159 (+) True G218325
TU248813 lncRNA upstream 35372 5042900 ~ 5043641 (+) False G218325
TU248803 lncRNA upstream 52175 5025416 ~ 5026838 (+) True LOC110507709
TU248807 lncRNA upstream 55405 5023261 ~ 5023608 (+) True G218322
TU248782 lncRNA upstream 87873 4989404 ~ 4991140 (+) True G218300
TU248843 lncRNA downstream 25777 5106803 ~ 5107019 (+) True G218348
TU248846 lncRNA downstream 32244 5113270 ~ 5113529 (+) True G218351
TU248856 lncRNA downstream 65538 5146564 ~ 5146835 (+) True G218361
TU248848 lncRNA downstream 69529 5150555 ~ 5151016 (+) True G218353
TU248865 lncRNA downstream 83194 5164220 ~ 5164522 (+) True G218370
XM_036966562.1 mRNA upstream 39858 5027793 ~ 5039155 (+) False LOC110507710
XM_036966571.1 mRNA upstream 41041 5029589 ~ 5037972 (+) False LOC110507710
XM_036966568.1 mRNA upstream 41041 5029641 ~ 5037972 (+) True LOC110507710
XM_036966556.1 mRNA upstream 52173 5018589 ~ 5026840 (+) False LOC110507709
XM_036966546.1 mRNA upstream 61144 4999319 ~ 5017869 (+) True LOC110516306
XM_036966600.1 mRNA downstream 232606 5313632 ~ 5318428 (+) True zgc:153896
XM_036966607.1 mRNA downstream 238312 5319338 ~ 5323900 (+) False LOC110535282
XM_036966609.1 mRNA downstream 238312 5319338 ~ 5323900 (+) False LOC110535282
XM_036966616.1 mRNA downstream 238312 5319338 ~ 5323900 (+) False LOC110535282
XM_036966645.1 mRNA downstream 286606 5367632 ~ 5371403 (+) True LOC110535312
TU248804 other upstream 57140 5018694 ~ 5021873 (+) False LOC110507709
TU248775 other upstream 117563 4945003 ~ 4961450 (+) True G218293
TU248792 other upstream 139119 4937097 ~ 4939894 (+) True G218309
TU248288 other upstream 626457 4451754 ~ 4452556 (+) True G217896
TU248238 other upstream 776157 4297556 ~ 4302856 (+) False G217870
TU248783 other downstream 244401 5325427 ~ 5326009 (+) True G218301
TU249003 other downstream 379066 5460092 ~ 5561271 (+) False G218465
TU249020 other downstream 451989 5533015 ~ 5626512 (+) False LOC110535491
TU249057 other downstream 462904 5543930 ~ 5633481 (+) False G218487
TU249058 other downstream 462904 5543930 ~ 5633481 (+) False G218487

Expression Profile