RNA id: TU248865


Basic Information

Item Value
RNA id TU248865
length 303
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G218370
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 5164220 ~ 5164522 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTCATGAATTTTGATTACTGGGCTAAATGCGTGAACAAAAActaggtatttggacataaagattaactttatcgaacaaatcaaacatttattgtggaactgggattcctgggagtgcattctgatgaagatcaccaaaggtaagggaatatttataatgctatttctgacttctgttgactccacaacatggtggatttctgtttggcttgatttgttgtctgagcgccgtactcagattattgcatggtttgcttttccctaaagttttttttaaatctgacacagcggttgcattaagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248848 lncRNA upstream 13204 5150555 ~ 5151016 (+) True G218353
TU248856 lncRNA upstream 17385 5146564 ~ 5146835 (+) True G218361
TU248846 lncRNA upstream 50691 5113270 ~ 5113529 (+) True G218351
TU248843 lncRNA upstream 57201 5106803 ~ 5107019 (+) True G218348
TU248834 lncRNA upstream 83194 5079013 ~ 5081026 (+) True G218339
TU248866 lncRNA downstream 1641 5166163 ~ 5166362 (+) True G218371
TU248869 lncRNA downstream 5170 5169692 ~ 5169906 (+) True G218374
TU248875 lncRNA downstream 16227 5180749 ~ 5183039 (+) True G218380
TU248882 lncRNA downstream 42478 5207000 ~ 5207282 (+) True G218387
TU248883 lncRNA downstream 44036 5208558 ~ 5208846 (+) True G218388
XM_036966585.1 mRNA upstream 13756 5056537 ~ 5150464 (+) True LOC110520779
XM_036966562.1 mRNA upstream 125065 5027793 ~ 5039155 (+) False LOC110507710
XM_036966571.1 mRNA upstream 126248 5029589 ~ 5037972 (+) False LOC110507710
XM_036966568.1 mRNA upstream 126248 5029641 ~ 5037972 (+) True LOC110507710
XM_036966556.1 mRNA upstream 137380 5018589 ~ 5026840 (+) False LOC110507709
XM_036966600.1 mRNA downstream 149110 5313632 ~ 5318428 (+) True zgc:153896
XM_036966607.1 mRNA downstream 154816 5319338 ~ 5323900 (+) False LOC110535282
XM_036966609.1 mRNA downstream 154816 5319338 ~ 5323900 (+) False LOC110535282
XM_036966616.1 mRNA downstream 154816 5319338 ~ 5323900 (+) False LOC110535282
XM_036966645.1 mRNA downstream 203110 5367632 ~ 5371403 (+) True LOC110535312
TU248804 other upstream 142347 5018694 ~ 5021873 (+) False LOC110507709
TU248775 other upstream 202770 4945003 ~ 4961450 (+) True G218293
TU248792 other upstream 224326 4937097 ~ 4939894 (+) True G218309
TU248288 other upstream 711664 4451754 ~ 4452556 (+) True G217896
TU248238 other upstream 861364 4297556 ~ 4302856 (+) False G217870
TU248783 other downstream 160905 5325427 ~ 5326009 (+) True G218301
TU249003 other downstream 295570 5460092 ~ 5561271 (+) False G218465
TU249020 other downstream 368493 5533015 ~ 5626512 (+) False LOC110535491
TU249057 other downstream 379408 5543930 ~ 5633481 (+) False G218487
TU249058 other downstream 379408 5543930 ~ 5633481 (+) False G218487

Expression Profile