RNA id: TU248882


Basic Information

Item Value
RNA id TU248882
length 283
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G218387
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 5207000 ~ 5207282 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctctctctgtagctctctctctctctctgtagctctctctctctctctctgtagctctctctctctctctctctgtagctctctctctctgtagctctctctctctctgtagctctctctctctctctttttctctctctatctctctctctctcttttttctctctctctctctctttttctctctcttttttctctctctctctctctctctgtagctctctctctctctctctctctctctgtagctctctctagctctctataCTTTGTatatttac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248875 lncRNA upstream 23961 5180749 ~ 5183039 (+) True G218380
TU248869 lncRNA upstream 37094 5169692 ~ 5169906 (+) True G218374
TU248866 lncRNA upstream 40638 5166163 ~ 5166362 (+) True G218371
TU248865 lncRNA upstream 42478 5164220 ~ 5164522 (+) True G218370
TU248848 lncRNA upstream 55984 5150555 ~ 5151016 (+) True G218353
TU248883 lncRNA downstream 1276 5208558 ~ 5208846 (+) True G218388
TU248884 lncRNA downstream 1622 5208904 ~ 5209356 (+) True G218389
TU248885 lncRNA downstream 3792 5211074 ~ 5211321 (+) True G218390
TU248890 lncRNA downstream 11449 5218731 ~ 5219259 (+) True G218395
TU248766 lncRNA downstream 94092 5301374 ~ 5324122 (+) False LOC110535282
XM_036966585.1 mRNA upstream 56536 5056537 ~ 5150464 (+) True LOC110520779
XM_036966562.1 mRNA upstream 167845 5027793 ~ 5039155 (+) False LOC110507710
XM_036966571.1 mRNA upstream 169028 5029589 ~ 5037972 (+) False LOC110507710
XM_036966568.1 mRNA upstream 169028 5029641 ~ 5037972 (+) True LOC110507710
XM_036966556.1 mRNA upstream 180160 5018589 ~ 5026840 (+) False LOC110507709
XM_036966600.1 mRNA downstream 106350 5313632 ~ 5318428 (+) True zgc:153896
XM_036966607.1 mRNA downstream 112056 5319338 ~ 5323900 (+) False LOC110535282
XM_036966609.1 mRNA downstream 112056 5319338 ~ 5323900 (+) False LOC110535282
XM_036966616.1 mRNA downstream 112056 5319338 ~ 5323900 (+) False LOC110535282
XM_036966645.1 mRNA downstream 160350 5367632 ~ 5371403 (+) True LOC110535312
TU248804 other upstream 185127 5018694 ~ 5021873 (+) False LOC110507709
TU248775 other upstream 245550 4945003 ~ 4961450 (+) True G218293
TU248792 other upstream 267106 4937097 ~ 4939894 (+) True G218309
TU248288 other upstream 754444 4451754 ~ 4452556 (+) True G217896
TU248238 other upstream 904144 4297556 ~ 4302856 (+) False G217870
TU248783 other downstream 118145 5325427 ~ 5326009 (+) True G218301
TU249003 other downstream 252810 5460092 ~ 5561271 (+) False G218465
TU249020 other downstream 325733 5533015 ~ 5626512 (+) False LOC110535491
TU249057 other downstream 336648 5543930 ~ 5633481 (+) False G218487
TU249058 other downstream 336648 5543930 ~ 5633481 (+) False G218487

Expression Profile