RNA id: TU250373


Basic Information

Item Value
RNA id TU250373
length 2220
lncRNA type read_through
GC content 0.47
exon number 6
gene id G219496
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 5519792 ~ 5618681 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaccacctgggggaggcTCGTCAGAAagttcaggacccagttgcacagggcggggtcaagacccagggtgaacagcattcttacataggtattcctcttgtccagatgagttagggcagtgtgcagtgtgattgcgttgtctgtggatctattggggtggtaagcaaattgaagtaggtctagggtgtcaggtagggtggaggtgatatgattcttgactagtctctcaaagcacttcatgatgacggaagtgagtgctacggggcgatagtaatttagctcagttaccttcactttcttgggaacaggaataatggtggccctcttgaagcatatgggaacagcagactgggataaggattgattgaatatgtccgtaaacacaccagccagctggtctgcgcatgctctgaggacacggctagggatgccatctgggccagcagccttgcaggggttaacacgtttaaatgctttactcacattggctgcggtgaaggagagcaaTCAGGTATTGGTAGCGGGccttgtcagtggcactgtattttcctcaaagcgagcaaagaagttgtttagtttgtctgggagcaagacgtcggtgtccggggctggttttctttttgtcatccatgattgactgtagaccctgccacatatgtctcatgtctaagccattgaattgcgactccactttgtctctatactggcgcttagcttgtttgattgccttgcggagggaatagctacactgtttgtatttggtcatgtttccggtcgccttgccatgattaaaagcagtggtttgcgctttcagttttgcgtgaatgctgccatcaatccacggtttctggttggggaaggttttaatagtcaccgtgggtacatcatcaccgatgcacttgctaataaactcgctcaacgaatcagcgtatacatcaatgttgttgtctgaggctatccggaacataacCCAATCCACATAAtaaaagcaatcttgaagcatggaatcagatttcgtcggaccagcgttgaacagacctgagcatgggcgTTTCCTTTTTTAGtttataggctgggagcaacaaaattgagtcgtggtcagatttgccgaaaggtcCTCTCAGACCAGGGTATCCAGACAGAACATTAAACCTGCAGGTCCTCTCAGACCAgggtatacatacatacatacagacagacagacagacagacagacagacagacagacagacagacagacagacacctttAAACCtgcatgtcacaccctgaccatagtttgctttgtatgtttctatgttttggttggtcagggtgtgatctgagtgggcattgtatgttacatgtctagtttgtctatttctatgtttggcctgatatggttctcaatcagaggcaggtgttagtcattgtctctgattgggaaccatatttaggtagcctgtttggtgttgggtttttgtgggtgattgttcctgtctctgtgtttgcaccagatagggctgttttaggttttttcacatttcttgttttgttagtttattcatgtatagtgtctatattaaagaaccatgaataaccaccatgctgcgttttggtccgcctctccttcacctcaagaaaaTCGTTACACTGCAGGTCCTCTCAGACCAGggtatccagacagacagacatttaaacctgcaggtcctctcagacctgggtagatagacagacagacagacctttaaACCTGCAGGTCCTCTCACACCAGGGTatccagatagacagacagacagacctttaaacctgcaggtcctctcagaccagggtatccagacagacagacagacctttaaACCTGCAGGTCCTCTCAGATCAGggtatccagacagacagacagacagacagaccattaaACATGCAGGTCCTCTCAGACCAGGGTAtgtagatagagacagacagacctttaaacctgcaggtcctctcagaccagggtatccagacagacagacagacagacctttaaACCTGCAGGTCCTCTCAGACCTAggtatatagatagagagagatatagagacagacagacagacctttaaacctgcaggtcctctcagaccagggtatccagacagacagacagacagacctttaaaactgcaggtcctctcagaccagggtatccagacagacagacagacctttaaacctgcaggtcctctcagaccagggtatccagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250330 lncRNA downstream 93560 5425739 ~ 5426232 (-) True G219464
TU250324 lncRNA downstream 104828 5412364 ~ 5414964 (-) True G219459
TU250301 lncRNA downstream 181331 5338247 ~ 5338461 (-) True G219450
TU250300 lncRNA downstream 187736 5331829 ~ 5332056 (-) True G219449
TU250237 lncRNA downstream 308149 5211348 ~ 5211643 (-) True G219388
TU250423 lncRNA upstream 44896 5663577 ~ 5663971 (-) True G219541
TU250426 lncRNA upstream 50744 5669425 ~ 5679757 (-) True G219543
TU250433 lncRNA upstream 61524 5680205 ~ 5682782 (-) False G219550
TU250434 lncRNA upstream 61524 5680205 ~ 5680821 (-) True G219550
TU250436 lncRNA upstream 66274 5684955 ~ 5685316 (-) True G219552
XM_036966701.1 mRNA downstream 27269 5457526 ~ 5492523 (-) False LOC110517595
XM_036966706.1 mRNA downstream 27269 5457526 ~ 5492523 (-) False LOC110517595
XR_005040245.1 mRNA downstream 27269 5457526 ~ 5492523 (-) True LOC110517595
XM_036966688.1 mRNA downstream 79889 5376122 ~ 5439903 (-) True LOC110535504
XM_036966694.1 mRNA downstream 80242 5376122 ~ 5439550 (-) False LOC110535504
XM_036964023.1 mRNA upstream 105001 5723682 ~ 5725550 (-) True LOC110533792
XM_036966773.1 mRNA upstream 136379 5755060 ~ 5766123 (-) True LOC110535565
XM_036966782.1 mRNA upstream 160139 5778820 ~ 5790359 (-) True LOC110535576
XM_036966792.1 mRNA upstream 171786 5790467 ~ 5795361 (-) False LOC110535585
XM_036966794.1 mRNA upstream 171786 5790467 ~ 5795980 (-) False LOC110535585
TU250121 other downstream 510386 5008084 ~ 5009406 (-) True G219290
TU250017 other downstream 747741 4770350 ~ 4772051 (-) False G219200
TU250018 other downstream 747741 4770350 ~ 4772051 (-) True G219200
TU249925 other downstream 870989 4643970 ~ 4648803 (-) True LOC118944839
TU249887 other downstream 979351 4538662 ~ 4540441 (-) True LOC118944829
TU250378 other upstream 69044 5687725 ~ 5688291 (-) True G219500
TU250493 other upstream 129477 5748158 ~ 5748714 (-) True G219591
TU250494 other upstream 133043 5751724 ~ 5752094 (-) True G219592
TU250699 other upstream 710921 6329602 ~ 6341613 (-) True LOC110534138
TU250746 other upstream 714287 6332968 ~ 6338813 (-) True G219820

Expression Profile