RNA id: TU249311


Basic Information

Item Value
RNA id TU249311
length 592
lncRNA type sense_over
GC content 0.38
exon number 2
gene id G218689
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6047450 ~ 6101346 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agagaaagagagagagagaaagagagagagagaaacaggacagTAGGAAGACAATTGGATAACAACATATTCACCAAAACACAGAGAGCTAGATCATTCACCCAATCCCACAGCCTGGTGCTCGTAACACTGAGCATAAGTACAGTAACTGTTCAAACTTCTCCCTTGAAAAAGTTTAATGGAACTTCTCGGTTTAAATAAAGCTGAAATGAAAAGGCTGTAACTAATAATGTTTTAGAGCAATAAAAATACATGTGGTTTGTTAAGAATTCATTTCTCCACTATTATACAGTTTCCGTTCGGTCTCTTATAACAGTTATCTCACGTCATATATaacacatcccacacacacacacactcatctcagTACCTTATGTCATGGTTCAGGAGCCTGCTTTTAGTCATAGGGCTTATTTCACTTCTTGGATGTGTGTGTAGAATGAAATATTTCTCATCCAATACAAGATCTAATGTCCATCCCATTTCATCCTGTCATCCAATACAAGATCTAATGTCCATCCCATTTCATCCTGTCATCCAATACAAGATCTAATGTCCATCCCATTTCATCCTGTCATCCAATACAAGATCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249303 lncRNA upstream 22878 6024279 ~ 6024572 (+) True G218681
TU249300 lncRNA upstream 31154 6016017 ~ 6016296 (+) True G218678
TU249286 lncRNA upstream 60465 5983124 ~ 5986985 (+) True G218668
TU249281 lncRNA upstream 65481 5976963 ~ 5981969 (+) True G218664
TU249280 lncRNA upstream 65642 5976863 ~ 5981808 (+) True G218663
TU249352 lncRNA downstream 54973 6156319 ~ 6157899 (+) True LOC110535756
TU249398 lncRNA downstream 79643 6180989 ~ 6181211 (+) True G218759
TU249402 lncRNA downstream 84958 6186304 ~ 6188327 (+) True G218763
TU249405 lncRNA downstream 92393 6193739 ~ 6194610 (+) True G218766
TU249408 lncRNA downstream 99581 6200927 ~ 6201398 (+) True G218769
XM_036966893.1 mRNA upstream 83470 5957257 ~ 5963980 (+) False LOC110508220
XM_036966815.1 mRNA upstream 151917 5822391 ~ 5895533 (+) False LOC110508149
XM_036966819.1 mRNA upstream 151917 5848768 ~ 5895533 (+) False LOC110508149
trnat-ugu-30 mRNA upstream 246501 5800877 ~ 5800949 (+) True trnat-ugu-30
NM_001165218.1 mRNA upstream 302633 5735806 ~ 5744817 (+) True cklf7
XM_036966926.1 mRNA downstream 27905 6129251 ~ 6157940 (+) False LOC110535756
XR_005040277.1 mRNA downstream 27906 6129252 ~ 6157940 (+) False LOC110535756
XM_036966922.1 mRNA downstream 27907 6129253 ~ 6157940 (+) False LOC110535756
XM_036966930.1 mRNA downstream 73316 6174662 ~ 6228920 (+) False LOC110534148
XM_036966978.1 mRNA downstream 146923 6248269 ~ 6254241 (+) False LOC110535707
TU249269 other upstream 83654 5957327 ~ 5963796 (+) True LOC110508220
TU249190 other upstream 151202 5890526 ~ 5896248 (+) False LOC110508149
TU249194 other upstream 151202 5890526 ~ 5896248 (+) False LOC110508149
TU249136 other upstream 298708 5748225 ~ 5748742 (+) True G218558
TU249013 other upstream 420872 5625707 ~ 5626578 (+) False LOC110535491
TU249361 other downstream 27984 6129330 ~ 6156137 (+) False LOC110535756
TU249367 other downstream 106157 6207503 ~ 6210967 (+) True LOC110534148
TU249355 other downstream 146732 6248078 ~ 6252483 (+) False LOC110535707
TU249356 other downstream 146732 6248078 ~ 6252483 (+) False LOC110535707
TU249357 other downstream 148028 6249374 ~ 6252483 (+) False LOC110535707

Expression Profile