RNA id: TU250643


Basic Information

Item Value
RNA id TU250643
length 1691
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G219729
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6099445 ~ 6124753 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTCAAAACGGATGCCTGTGAGTGAGTCTGTGATGTGTAATGGTGGATGGccgggtgggggtggaggggggggaccacacacacacacacacacaggcgcagtCTGACACACAAACCAGGCCAGGCTGTCATAACAGCTTCATAAGAGCTTATAACAGCTTATAACACACCATGCATATGCTCCTGTACTCCTACACAGAAACACATAgacagtaacactgtcctcccaTCTCTCACAGCCTCCATATTACAAACATATAAAAAGAGCATGACTGCGGAatgtttcaacctctcccagGCCCCTTACAGTCATCCATCGAGCACCCTTCTACTCCCAgcccccctttcctcctctcctgttctcctcctctctgcctcttcactccctctctcggggagcagggtgggtgtgtgtctgtgcttgtcACCCTCTGAGGGTGTAAGTGCTGCTTGCGTTCTTTCCTCCAATAATCCTAAGAGTTCATTCTTAAATCTACCACAGCCAGTTCAAGTCTGAGAGACTGAGTCATCAATGGTTAGTGCTGAGTACCTCCTCAcccaatctctctttctcccggAGCTACTGACAGACTGGCAGTACATGGCCAGTCTTAGTATTAGAATCATTTAGAGTTTGAAATGAAACCTTCCCATCTCTAGCTGTTGCGTTAAAAAAAAAGATAGCACTAAAGAAATTGCACTTGGACAACAGAGCCAAACAGCAGTCACTTcactgtgtgtgttgggtgttttATATAGATCTTCTGTTTTAATGCCTTCTGTTGTGTGActaagctcacacacacacagacagattgcTGGGTCACTCACGCTGTACGTCGTCTTGACTGACGAtacctttttttatttaaatgtctCCTACCTCCAATTTCGCAGGGGAAACAAAAAAAACGCAGCTTCTGTTTCCCTGGGACATCATCAGAGCGTCACACAGCTACTCACACAGACTGCCTTCCCCTCCCCCTAGGACAGACTGCTATGAACTTCAGACTGAaccgaaccagactgaagcaGGACAAACCAGTCCAGAACAAAGACCTGGCTCTTATTTTCCTCCTTCAGGCATAACCAGACTAAAACAGGACAGAGAAATGTCACTTTCATTTTTTGTCATCCTTTCAAATCCTCCCATCACACGAGAAAAACGGTCCAGATAGAAAGTGGTAAGCATTTGAATAATTGTCTTTATGGcgtgaaaagcattttttgattGGTTGTCCTTAATGAGTGAAAAGCAATTTGATTGGCTGTCTCTCAGCGTAGCTCAGCAAGTCTCGCTCCTCTGAGCGTGGCTGCGTGGTgctctgggggtggggggggggggggggagggggtggtgggggtggacgGAGGAGACTGTTTAAagtacatggaggaggagggcATGGTGTCAGATTGTGGGTAGGACTCATCCTCCTTCTTGATAAGCGGCCTATGGGAGGGCATCTGGTATAGGCAGGAGGACTTGGGCTCGTAGCTCCCCTCAACAAACACGTTGAAGCTCGGCAGAGAGGTGGTGGCGGCCGCCGAGATCTCACCCCCCCCCAAGTCCAACTTGGTATAGTCCGGGGTCATGAGGTCAGAGCTGTAGCTGTCGCCCTGGTAACCAAAGGACTGGGCGGAGTAGGACGAGCCTGGAGGGGCAGGCCCATACTGTGCCTGCACACATG

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250577 lncRNA downstream 13296 6085170 ~ 6086149 (-) True G219668
TU250579 lncRNA downstream 17629 6035612 ~ 6081816 (-) True G219670
TU250611 lncRNA downstream 73616 6025479 ~ 6025829 (-) True G219701
TU250580 lncRNA downstream 75229 6023995 ~ 6024216 (-) True G219671
TU250610 lncRNA downstream 75743 6023457 ~ 6023702 (-) True G219700
TU250662 lncRNA upstream 28738 6153491 ~ 6153948 (-) True G219748
TU250647 lncRNA upstream 31462 6156215 ~ 6157934 (-) True G219733
TU250675 lncRNA upstream 57028 6181781 ~ 6182031 (-) True G219761
TU250677 lncRNA upstream 57416 6182169 ~ 6185965 (-) True G219762
TU250701 lncRNA upstream 81116 6205869 ~ 6207103 (-) True G219782
XM_036966889.1 mRNA downstream 142413 5951557 ~ 5957032 (-) False LOC110520778
XR_005040269.1 mRNA downstream 142413 5951557 ~ 5957032 (-) True LOC110520778
XM_036966856.1 mRNA downstream 166488 5927299 ~ 5932957 (-) True LOC110508167
XM_036966848.1 mRNA downstream 166489 5927299 ~ 5932956 (-) False LOC110508167
XR_005040268.1 mRNA downstream 181644 5913078 ~ 5917801 (-) True LOC110508233
XM_021620871.2 mRNA upstream 33277 6158030 ~ 6173396 (-) True LOC110535692
trnat-cgu-2 mRNA upstream 99044 6223797 ~ 6223869 (-) True trnat-cgu-2
XM_036966940.1 mRNA upstream 104159 6228912 ~ 6247838 (-) False LOC110535643
XM_036966947.1 mRNA upstream 104159 6228912 ~ 6259816 (-) True LOC110535643
XM_036966990.1 mRNA upstream 175244 6299997 ~ 6325567 (-) False LOC110535663
TU250494 other downstream 347351 5751724 ~ 5752094 (-) True G219592
TU250493 other downstream 350731 5748158 ~ 5748714 (-) True G219591
TU250378 other downstream 411154 5687725 ~ 5688291 (-) True G219500
TU250121 other downstream 1090039 5008084 ~ 5009406 (-) True G219290
TU250018 other downstream 1327394 4770350 ~ 4772051 (-) True G219200
TU250699 other upstream 204849 6329602 ~ 6341613 (-) True LOC110534138
TU250746 other upstream 208215 6332968 ~ 6338813 (-) True G219820
TU250797 other upstream 361747 6486500 ~ 6491015 (-) True LOC110507902
TU251084 other upstream 805238 6929991 ~ 6931881 (-) False LOC110508304
TU251087 other upstream 805238 6929991 ~ 6932356 (-) False LOC110508304

Expression Profile