RNA id: TU249405


Basic Information

Item Value
RNA id TU249405
length 747
lncRNA type intronic
GC content 0.45
exon number 3
gene id G218766
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6193739 ~ 6194610 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagtctgacaaccaataggaaagaacagaaaggagaagagaggagagagtctgagaacccacaggaaagaacagagagaagagagagaggagagagtctgagaaccaataggaaagaacagagagcagaagagagaggagagagtctgagaaccaacaggaaagaacagagaggagagagtctgagaaccaacaggaaagaacagagaggagagagtctgagaaccaacaggaaagaacagagaggagagagtctgacaagcaataggAAAGaacagaggggagaagagagaggagagagtctgagaaccaacaggaaagaacagagaggagagagtctcagaaccaataggaaagaacagagaggagagagtctgagaaccaataggaaagaacagagaggagatgagagaggagagagtctgagaaccaacaggaaagaacagagaggagagagtctgagaaccaacaggaaagaacagagaggagagagtctgagaaccaataggaaagaacagagaggagaagagagaggagagagtctgagaaccaacaggaaaaaacagagaggagagagtctgagaactaCCAGGAAAGAACatagaggagagagtctgagaaccaataggaaagaacagagaggagagagagaagagagtctgagaaccaataggaaagaacagagaggagacagtctgagaaccaacaggaaagaacagagaggagagagtctgagaaccaacaggaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249402 lncRNA upstream 5412 6186304 ~ 6188327 (+) True G218763
TU249398 lncRNA upstream 12528 6180989 ~ 6181211 (+) True G218759
TU249352 lncRNA upstream 35840 6156319 ~ 6157899 (+) True LOC110535756
TU249311 lncRNA upstream 92393 6047450 ~ 6101346 (+) True G218689
TU249306 lncRNA upstream 100966 6088597 ~ 6092773 (+) True LOC110534158
TU249408 lncRNA downstream 6317 6200927 ~ 6201398 (+) True G218769
TU249421 lncRNA downstream 42959 6237569 ~ 6238625 (+) True G218780
TU249426 lncRNA downstream 70438 6265048 ~ 6265311 (+) True G218783
TU249427 lncRNA downstream 71647 6266257 ~ 6266504 (+) True G218784
TU249435 lncRNA downstream 108656 6303266 ~ 6305269 (+) True G218791
XM_036966926.1 mRNA upstream 35799 6129251 ~ 6157940 (+) False LOC110535756
XR_005040277.1 mRNA upstream 35799 6129252 ~ 6157940 (+) False LOC110535756
XM_036966922.1 mRNA upstream 35799 6129253 ~ 6157940 (+) False LOC110535756
XM_036966901.1 mRNA upstream 69340 6088505 ~ 6124399 (+) False LOC110534158
XM_036966978.1 mRNA downstream 53659 6248269 ~ 6254241 (+) False LOC110535707
XM_036966932.1 mRNA downstream 65294 6259904 ~ 6277154 (+) False LOC110534143
XM_036966936.1 mRNA downstream 65294 6259904 ~ 6277154 (+) False LOC110534143
XM_036966968.1 mRNA downstream 82864 6277474 ~ 6290170 (+) False LOC110535685
XM_036966957.1 mRNA downstream 82928 6277538 ~ 6290170 (+) False LOC110535685
TU249361 other upstream 37602 6129330 ~ 6156137 (+) False LOC110535756
TU249269 other upstream 229943 5957327 ~ 5963796 (+) True LOC110508220
TU249190 other upstream 297491 5890526 ~ 5896248 (+) False LOC110508149
TU249194 other upstream 297491 5890526 ~ 5896248 (+) False LOC110508149
TU249136 other upstream 444997 5748225 ~ 5748742 (+) True G218558
TU249367 other downstream 12893 6207503 ~ 6210967 (+) True LOC110534148
TU249355 other downstream 53468 6248078 ~ 6252483 (+) False LOC110535707
TU249356 other downstream 53468 6248078 ~ 6252483 (+) False LOC110535707
TU249357 other downstream 54764 6249374 ~ 6252483 (+) False LOC110535707
TU249358 other downstream 56386 6250996 ~ 6252483 (+) False LOC110535707

Expression Profile