RNA id: TCONS_00030215


Basic Information

Item Value
RNA id TCONS_00030215
length 1551
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id XLOC_014733
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 22034197 ~ 22039502 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

caaaagtggaccaggATCAAATAATCCTGCGTCTgtgagtctccgctgatgtcaagaagaaggccaggggttacagtgaaatactgcctttttcCTGCGCCCCTCCtcatcacaagatacctgtctgcaagagATTTCTAAGTGTCttttACTTTGGGATTATGATGTCTGCTTGCACCTTATGGTCTACGGGAAGGTATTGTGGGAACCTAAATAGACGATATGGGCATGGCTTAGTATGCTTAACATGACTAGGGTCCTGCAACAGCGCTACCGGACGTTTCCCTAGCAGATTAAGTGTTCATAGTGAGGAGGCGCAGGAGCTTAAAGTTAAAATCACTAGCAAGTGTGACTTCAAGATCAGATTTTCCTTGGAAACACCAATCATGTTTAAAATCCATGTTGGAGAAGATtggaggggggagaaaaaaaaaatcccagaggAATAAAAGTTGACTTTGAGAGCCTTTGAGTTTCCCGGACAGCCCATCTGCCATAAAACACCATTGTAAAAGCTGGACGCGGGTCTCTAAGATTGATGACTTCAAGTCTTTCAAAAAGCTGTTTGTATAAGTGGAGTTATGCTAAAAATGCAGCAGTGATAATATCACCGCCGTTCATCCGAAACAGAGCATTACCGCAATGATAAACACTGCGTTTGACTTCATGGATTTGATCAGCTGGTGTGTTTGAAATACGGGAAAAAAGTGGGTGGGAAAACATTTGCCTTTCTCCAAAATTAAGTCGTTATTTCACACAGCCATAAATGCGTGTCCTGAGTTACTCTGGCAGTCTCGGCTTCCCGTCAAATCACAATAGACATGTCAGGAGATCATCTTAGAACACAAGCATATCCGCCCCTTTCCCACCACAACACGCCGGAGGATTTACATCTTTCCATATGAGCTTAGCGATGTCATGAAAATCATCCTTTTTATGAGCAAACATCTTTGCTAAGAACTACCATTGTTTTCTGCGGCCACTCCATGCATTTCTACGGCTTTATGTCACCTGTAAAGAAGCAACAGGTCATAAAGCACTTTGTTTTTACAGCCTCTCTGTCTTCCCCCATGAAAAtgacttagattttttttactctcCTACATTGTGGACAGCTGGAGCTTTTCAGGATTTCACTGCATCTTGGTGTGTCCAAGCAATAAGTGTGGGGCCAGTGCAGTAGTCACTGCAGGATTTAAAAAGACTTCCTCATGCAGAAATATTTAATCTCCTTTCAGAAAATAAAAGAGGGAGAGGGGAAAGAAAACCCACCATGAGATTTTCCGTTCTTTATTACTTGTGCAGTATCAAAGAGCTGCAAATCATAGTTGTTGTTTCACCTTTTCTTTAAGTGAAGAAAAGTTTAAGTGTGTAAGTGTTGATATGGAATTTTTTGATGTGATGCAGTGGTTGTGCAAATGCTCTCGAAAATATGTAGTGTTGATATGTTGCAGAGTCCACACATTTTTTCCtccttatttaattttaatttcaatcTACTGTACAGACTTTGCTTTCAAAGTGGTTATACATATttgaataaaagtacaa

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0008152 metabolic process biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0043169 cation binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029119 lncRNA downstream 201696 21825823 ~ 21832501 (-) True XLOC_014732
TCONS_00030213 lncRNA downstream 666865 21358578 ~ 21367332 (-) False XLOC_014730
TCONS_00029104 lncRNA downstream 666865 21358624 ~ 21367332 (-) False XLOC_014730
TCONS_00030212 lncRNA downstream 666909 21358578 ~ 21367288 (-) False XLOC_014730
TCONS_00030214 lncRNA downstream 667005 21362921 ~ 21367192 (-) False XLOC_014730
TCONS_00030216 lncRNA upstream 20209 22059711 ~ 22062054 (-) True XLOC_014734
TCONS_00030218 lncRNA upstream 926284 22965786 ~ 22969561 (-) False XLOC_014742
TCONS_00030217 lncRNA upstream 926284 22965786 ~ 22969561 (-) True XLOC_014742
TCONS_00029774 lncRNA upstream 1012476 23051978 ~ 23052426 (-) False XLOC_014747
TCONS_00030219 lncRNA upstream 1245692 23285194 ~ 23288120 (-) True XLOC_014754
TCONS_00029115 mRNA downstream 201567 21815184 ~ 21832630 (-) False XLOC_014732
TCONS_00029118 mRNA downstream 201693 21815358 ~ 21832504 (-) False XLOC_014732
TCONS_00029114 mRNA downstream 201715 21815165 ~ 21832482 (-) False XLOC_014732
TCONS_00029109 mRNA downstream 201725 21814047 ~ 21832472 (-) False XLOC_014732
TCONS_00029112 mRNA downstream 201727 21815014 ~ 21832470 (-) False XLOC_014732
TCONS_00029120 mRNA upstream 278498 22318000 ~ 22328154 (-) False XLOC_014735
TCONS_00029121 mRNA upstream 278898 22318400 ~ 22323695 (-) True XLOC_014735
TCONS_00029122 mRNA upstream 293819 22333321 ~ 22346582 (-) False XLOC_014736
TCONS_00029123 mRNA upstream 302309 22341811 ~ 22346603 (-) True XLOC_014736
TCONS_00029124 mRNA upstream 321454 22360956 ~ 22387141 (-) True XLOC_014737
TCONS_00029100 other downstream 917654 21116411 ~ 21116543 (-) True XLOC_014728
TCONS_00029097 other downstream 1594937 20439142 ~ 20439260 (-) True XLOC_014725
TCONS_00029085 other downstream 1764056 20251672 ~ 20270141 (-) False XLOC_014721
TCONS_00029077 other downstream 1885748 20143850 ~ 20148449 (-) False XLOC_014717
TCONS_00029070 other downstream 2172685 19822162 ~ 19861512 (-) True XLOC_014710
TCONS_00029139 other upstream 584767 22624269 ~ 22664107 (-) False XLOC_014739
TCONS_00029140 other upstream 584834 22624336 ~ 22648963 (-) False XLOC_014739
TCONS_00029141 other upstream 598662 22638164 ~ 22658350 (-) True XLOC_014739
TCONS_00029142 other upstream 606680 22646182 ~ 22646299 (-) True XLOC_014740
TCONS_00029144 other upstream 1002984 23042486 ~ 23042956 (-) True XLOC_014743

Expression Profile

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