RNA id: TU249427


Basic Information

Item Value
RNA id TU249427
length 248
lncRNA type intronic
GC content 0.36
exon number 1
gene id G218784
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6266257 ~ 6266504 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggagcaagcccatgtaatgctttgtaggttagcagtaaaaccttgaaatcagcccttgccttaacaggaagccaatgtagggaggctagcactggagtaatatgatccaattatttggttctagtcaggattctagcagccgtatttagcactaactgaagtttatttagtgctttatccgggtagccggaaagtagagcattacagtagtctaacctagaagtaacaaaagcatggattcatttctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249426 lncRNA upstream 946 6265048 ~ 6265311 (+) True G218783
TU249421 lncRNA upstream 27632 6237569 ~ 6238625 (+) True G218780
TU249408 lncRNA upstream 64859 6200927 ~ 6201398 (+) True G218769
TU249405 lncRNA upstream 71647 6193739 ~ 6194610 (+) True G218766
TU249402 lncRNA upstream 77930 6186304 ~ 6188327 (+) True G218763
TU249435 lncRNA downstream 36762 6303266 ~ 6305269 (+) True G218791
TU249437 lncRNA downstream 39263 6305767 ~ 6307238 (+) False G218793
TU249438 lncRNA downstream 39263 6305767 ~ 6307238 (+) False G218793
TU249439 lncRNA downstream 39263 6305767 ~ 6307238 (+) False G218793
TU249440 lncRNA downstream 39263 6305767 ~ 6307238 (+) False G218793
XM_036966978.1 mRNA upstream 12016 6248269 ~ 6254241 (+) False LOC110535707
XM_036966930.1 mRNA upstream 37337 6174662 ~ 6228920 (+) False LOC110534148
XM_036966926.1 mRNA upstream 108317 6129251 ~ 6157940 (+) False LOC110535756
XM_036966968.1 mRNA downstream 10970 6277474 ~ 6290170 (+) False LOC110535685
XM_036966957.1 mRNA downstream 11034 6277538 ~ 6290170 (+) False LOC110535685
XM_036966955.1 mRNA downstream 11153 6277657 ~ 6290170 (+) False LOC110535685
XM_036966961.1 mRNA downstream 11175 6277679 ~ 6290170 (+) False LOC110535685
XM_036966974.1 mRNA downstream 13510 6280014 ~ 6290170 (+) True LOC110535685
TU249359 other upstream 3900 6259937 ~ 6262357 (+) True LOC110534143
TU249353 other upstream 12666 6252557 ~ 6253591 (+) False LOC110535707
TU249354 other upstream 12666 6252557 ~ 6253591 (+) True LOC110535707
TU249357 other upstream 13774 6249374 ~ 6252483 (+) False LOC110535707
TU249525 other downstream 183834 6450338 ~ 6455202 (+) True G218842
TU249596 other downstream 338818 6605322 ~ 6607009 (+) True LOC110520771
TU249650 other downstream 358080 6624584 ~ 6631601 (+) True LOC110507851
TU249685 other downstream 451124 6717628 ~ 6719163 (+) True G218971
TU249730 other downstream 528056 6794560 ~ 6807670 (+) True LOC110507732

Expression Profile