RNA id: TU249438


Basic Information

Item Value
RNA id TU249438
length 1410
lncRNA type antisense_over
GC content 0.39
exon number 3
gene id G218793
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6305767 ~ 6307238 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagagagagacagacagagagagagagacagctatagATATGTCCTGTATCTTTACTGCTTTATATGTAACGTTTTCCTTTAATCATGCAGTGATGTCAATAGGAGATCAAATTTAAGGTATGCATGCTGATTATGTGTTTTCTAAACAGTCTCTTTAGGTTCTTACTGTTTTCTAGAGAGTCTCTTTAGGTTCTTACTGTTTTCTAAACAGTCTCTTTAGGTTCTTACTGTTTTCTAAACAGTCTCTTTAGGTTCTTAGTGTTTTCTAGAGAGTCTCTTTAGGTTCTTAGTGTTTTCTAGAGGGTCTCTTTAGGTTCTTAGTGTTTTCTAAACAGTCTCTTTAGGTTCTTAGTGTTTTCTAAACAGTCTCTTTAGGTCCTTAGTGTTTTCTAGAGAGTCTCTTTATGTCCTTAGTGTTTTCTAAACAGTCTCCTTTAGGTCCTTAGTGTTTTCTAGAGAGTCTCTTTATGTCCTTAGTGTTTTCTAAACAGTCTCCTTTAGGTTCTTACTGTTTTCTAGAGAGTCTCTTTATGTTCTTAGTGTTTTCTAAACAGTCTCTTTAGGTTCTTAGTGTTTTCTAAACAGTCTCTTTAGGTCCTTAGTGTTTTCTAAACAGTCTCTTTAGGTTCTTAGTGTTTTCTAAACAGTCTCTTTAGGTTCTTAGTGTTTTCTAAACAGTCTCTTTAGGTTCTTAGTGTTTTCTAGAGAGTCTCTTTAGGTTCTTAGTGTTTTCTAAACAGTCTCTTTAGGTCCTTAGTGTTTTCTAGAGAGTCTCTTTGTGTCCTTAGTGTTTTCTAAACAGTCTACTTTAGGTCCTTAGTGTTTTCTAGAGAGTCTCTTTATGTCCTTAGTGTTTTCTAGAGAGTCTCTTTAGGTCCTTAATGTTTTCTAAACAGTCTCTTTAGGTCCTTAGTGTTTTCTAAACAGTCTCTTTAGGTTCTTAGTGTTTTCTAGAGAGTCTCTTTATGTCCTTAGTGTTTTCTAAACAGTCTCTTTATGTCCTTAGTGTTTTCTAGATAGTCTCTTTAGGTCCTTAGTGTTTTCTAAACAGTCTCTTTAGGTCCTTAGTGTTTTCTAAACAGTTTCCTTAGTACTGGGGCACCTATAGTGATTGTGTGAGTGTGATTTCCACCCCTGCTGTACCTTGCCGATGGGCATGGGGTATATCCCTTTCAACTGTTCTCTGAGGTTGATCGGTCCAGGATTGACCCACAGGTTCTCCTGCACGACAATTTTAACCCTCGTGTTACCGTTGAGAGCGTTCACCGACTCCCCGCCCATGTCCTCCACACGAACAATCAGCGTGAAGTCTGGGTCTTCCAGAGGGTTCAGCCTCCGAGACTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249435 lncRNA upstream 498 6303266 ~ 6305269 (+) True G218791
TU249427 lncRNA upstream 39263 6266257 ~ 6266504 (+) True G218784
TU249426 lncRNA upstream 40456 6265048 ~ 6265311 (+) True G218783
TU249421 lncRNA upstream 67142 6237569 ~ 6238625 (+) True G218780
TU249408 lncRNA upstream 104369 6200927 ~ 6201398 (+) True G218769
TU249442 lncRNA downstream 584 6307822 ~ 6318435 (+) True G218794
TU249447 lncRNA downstream 21140 6328378 ~ 6338768 (+) False G218798
TU249451 lncRNA downstream 21140 6328378 ~ 6333939 (+) True G218798
TU249454 lncRNA downstream 34712 6341950 ~ 6342178 (+) True G218801
TU249458 lncRNA downstream 37607 6344845 ~ 6407086 (+) True G218805
XM_036966968.1 mRNA upstream 15597 6277474 ~ 6290170 (+) False LOC110535685
XM_036967042.1 mRNA downstream 70050 6377288 ~ 6399616 (+) True LOC110489435
XM_036967101.1 mRNA downstream 118896 6426134 ~ 6444584 (+) False LOC110508031
XM_036967069.1 mRNA downstream 118896 6426134 ~ 6448961 (+) False LOC110508031
XM_036967075.1 mRNA downstream 118896 6426134 ~ 6448961 (+) False LOC110508031
XM_036967081.1 mRNA downstream 118896 6426134 ~ 6448961 (+) False LOC110508031
TU249359 other upstream 43410 6259937 ~ 6262357 (+) True LOC110534143
TU249353 other upstream 52176 6252557 ~ 6253591 (+) False LOC110535707
TU249354 other upstream 52176 6252557 ~ 6253591 (+) True LOC110535707
TU249357 other upstream 53284 6249374 ~ 6252483 (+) False LOC110535707
TU249525 other downstream 143100 6450338 ~ 6455202 (+) True G218842
TU249596 other downstream 298084 6605322 ~ 6607009 (+) True LOC110520771
TU249650 other downstream 317346 6624584 ~ 6631601 (+) True LOC110507851
TU249685 other downstream 410390 6717628 ~ 6719163 (+) True G218971
TU249730 other downstream 487322 6794560 ~ 6807670 (+) True LOC110507732

Expression Profile