RNA id: TU249460



Basic Information


Item Value
RNA id TU249460
length 673
lncRNA type antisense_over
GC content 0.35
exon number 2
gene id G218807
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6353777 ~ 6354480 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tccctttacacttctgtgtttaaggtagttgttgtgaaattgttaggttagattactcgttggttattactgcattgtcgggaactagaagcacaagcatttcgctaccctcgcattaacatctgctaatcatgtgtatgtgatcaataacatctgctaaccatgtgtatgtgaccattaacatctgctaaccatgtgtttgtgaccattaacatctgctaaccatgtgtttgtgaccattaacatctgctaaccatgtgtatgtgacaaataacatttgatttgattcatcttGTTATTTCTGCAACAGAAAAAAAGACTGATGGAATACACAGTATAACGTAGCAGTTTATTCCATAATTTACACGTTCTCTTCTATCAAACTGTAAAAACAGTAGAGAATATAAAGACAGAATAACATAGTCCAATGTTTCTCAGAAAGGGACACTTCTTTGGTCTCTGCATAAGGTCATTTGCggaaagcctgtgtgtgtgtgtgttactgagtGATGTGTGAGATGGTGGACTGGAAGGCGAAGGAGATGTGGGTTCGTGCATGGTCCAGGTAAGCAtctctgaaggtgtgtgtgtcccCTGCGAAGTGTCTCCACTGTATCAGCTCTGACATGCTCAGATGCTTCTGCCTTGCCCCACCACGGTCACCTTGACGACC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU249454 lncRNA upstream 11599 6341950 ~ 6342178 (+) True G218801
TU249447 lncRNA upstream 15009 6328378 ~ 6338768 (+) False G218798
TU249451 lncRNA upstream 19838 6328378 ~ 6333939 (+) True G218798
TU249442 lncRNA upstream 35342 6307822 ~ 6318435 (+) True G218794
TU249441 lncRNA upstream 46539 6305767 ~ 6307238 (+) True G218793
TU249514 lncRNA downstream 79967 6434447 ~ 6439646 (+) True G218839
TU249523 lncRNA downstream 95858 6450338 ~ 6455202 (+) False G218842
TU249531 lncRNA downstream 154714 6509194 ~ 6510051 (+) True LOC110507908
TU249549 lncRNA downstream 162388 6516868 ~ 6545971 (+) True G218862
TU249591 lncRNA downstream 202297 6556777 ~ 6609484 (+) True G218892
XM_036966968.1 mRNA upstream 63607 6277474 ~ 6290170 (+) False LOC110535685
XM_036967042.1 mRNA downstream 22808 6377288 ~ 6399616 (+) True LOC110489435
XM_036967101.1 mRNA downstream 71654 6426134 ~ 6444584 (+) False LOC110508031
XM_036967069.1 mRNA downstream 71654 6426134 ~ 6448961 (+) False LOC110508031
XM_036967075.1 mRNA downstream 71654 6426134 ~ 6448961 (+) False LOC110508031
XM_036967081.1 mRNA downstream 71654 6426134 ~ 6448961 (+) False LOC110508031
TU249359 other upstream 91420 6259937 ~ 6262357 (+) True LOC110534143
TU249353 other upstream 100186 6252557 ~ 6253591 (+) False LOC110535707
TU249354 other upstream 100186 6252557 ~ 6253591 (+) True LOC110535707
TU249357 other upstream 101294 6249374 ~ 6252483 (+) False LOC110535707
TU249525 other downstream 95858 6450338 ~ 6455202 (+) True G218842
TU249596 other downstream 250842 6605322 ~ 6607009 (+) True LOC110520771
TU249650 other downstream 270104 6624584 ~ 6631601 (+) True LOC110507851
TU249685 other downstream 363148 6717628 ~ 6719163 (+) True G218971
TU249730 other downstream 440080 6794560 ~ 6807670 (+) True LOC110507732

Expression Profile