RNA id: TU249523


Basic Information

Item Value
RNA id TU249523
length 4118
lncRNA type antisense_over
GC content 0.48
exon number 4
gene id G218842
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6450338 ~ 6455202 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTTAAACACAGGGGTATAGAACATAGACAAGAACAGCAATAAGGAACTGCACAGAAACATGGCAGAGCTGTAACCTGAGCTCTGACCCAAACTCTCCAGTTAGTTCCATGTAACCACAGGCCTAGGATCAGATTAGTTCTAAGATTAACCATAAGGAGGATGTAAAAAGCCTTATCCAGGTAGTGGTTAGGGGCAACTACAACTGATCCAAGCTGCAGTCTGTTTGGGTCTGTCTCCATCTACAGGACAAGACCGGGACTGCAGCTTTTCACCTGGGGACAGTTACCAGCATGTAgcagtttcatcagagcagatCAACTTGACAATACAATAAGTCATGACTAATTGTTTGTGTCATCATTTAAACAGTTAGGGCTTTGATTGTGTAGCAGCAGTAACCTTACAGGctgtgttattacagggtgtgtagtgtgggagcgtgttattacagggtgtgtagtgtgggagcgtgttattacagggtgtatAGTGTGGGAgcgtgttattacagggtgtatAGTGTGGGAgcgtgttattacagggtgtatAGTGTGGGAgcgtgttattacagggtgtatagtgtgggagcatgttattacagggtgtaTAGTGTGGGAgcgtgttattacagggtgtatagtgtgggagcatgttattacagggtgtgtagtgtgggagcgtgttattacagggtgtatagtgtgggagcatgttattacagggcgtgtagtgtgggagcatgttattacagggtgtgtagtgtgggagcatgttGTTACAGGGcgtgtagtgtgggagcatgtttttacagggtgtgtagtgtgggagcatgttgttacagggtgtgtagtgtgggagcatgttattGCAGGgtgtgttattacagggtgtgtagtgtgggagcatgttattGCAGGGcgtgtagtgtgggagcatgttattacagggcgtgtagtgtgggagcatgttattacagggcgtgtagtgtgggagcatgttattacagggtgtgtagtgtgggagcatgttattacagggtgtgtagtgtgggagcacGTTATTACAGGGCGTGTAGTGTGGGAGCACgtgtgggagcatgttattacagggcgtgtagtgtgggagcatgttattacagggtgtgtagtgtgggagcacGTTATTACAGGGcgtgtagtgtgggagcatgttattacagggcgtgtagtgtgggagcatgttattacagggcgtgtagtgtgggagcatgctattacagggtgtgtagtgtgggagcatgttattacagggtgtgtagtgtgggagcacgttattacagggtgtgtagtgtgggagcacgtgtgggagcatgttattacagggcgtgtagtgtgggagcatgttattacagggtgtgtagtgtgggagcatgttattacagggtgtgtagtgtgggagcatgttattacagggtgtgtagtgtgggagaatgttattacagggtgtgtagtgtgggagcatgttattacagggcGTGTAGTGTGGGAgcgtgttattacagggtgtgtagtggGGGAgcgtgttattacagggtgtgtagtgtgggagcatgttattacagggtgtgtagtgtgggagcgtgttattacagggtgtgtagtgtgggagcgtattattacagggtgtgtagtgtgggagcatgttattacagggtgtgtagtgtgggagcatgttattacagggcgtgtagtgtgggagcatgttattacagggtgtgtagtgggggagcatgttattacagggcgtttagtgtgggagcatgttattacagggtgtgtagtgggggagcatgttattacagggtgtgtagtgtgggagcatgttattacagggtgtgtagtgtggaagaatgttattacagggtgtgtagtgtgggagcatgtttttacagggtgtgtagtgtgggagcatgttattacagggtgtgtagtgtgggagcatgttattacagggtgtgtagtgtgggagcatgttattacagggtgtgtagtggggtagcatgttattacagggcgtgtagtgtgggagcatgttattacagggtatGTAGTGggggagcatgttattacagggtgtgtagtgtgggagcatgtcattacagggtgtgtagtgtgggagcatgttattacagggtgtgtagtgtgggagcatgttattacagggtgtgtagtgtgggagcatgttattacagggtgtgtagtgtgggagcacgtgtgggagcatgttattacagggcgtgtagtgtgggagcatgttattGCAGGGcgtgtagtgtgggagcatgttattacagggcgtgtagtgtgggagcatgttattacagggcgtgtagtgtgggagcatgttattacagggtgtgtagtgtgggagcatgttattacagggtgtgtagtgtgggagcacGTTATTACAGGGCGTGTAGTGTGGGAGCACgtgtgggagcatgttattacagggcgtgtagtgtgggagcatgttattacagggtgtgtagtgtgggagcacGTTATTACAGGGcgtgtagtgtgggagcatgttattacagggcgtgtagtgtgggagcatgttattacagggcgtgtagtgtgggagcatgctattacagggtgtgtagtgtgggagcatgttattacagggtgtgtagtgtgggagcacGTTATTACAGGGCGTGTAGTGTGGGAGCACgtgtgggagcatgttattacagggcgtgtagtgtgggagcatgttattacagggtgtgtagtgtgggagcatgttattacagggtgtgtagtgtgggagcatgttattacagggtgtgtagtgtgggagcatgttattacagggtgtgtagtgtgggagcatgttattacagggcGTGTAGTGTGGGAgcgtgttattacagggtgtgtagtgggGGAGCGTGTTATTACAGGGCGTGTAGTGTGGGAgcgtgttattacagggtgtgtagtgtgggagcatgttattacagggtgtgtagtgtgggagcgtgttattacagggtgtgtagtgtgggagcgtattattacagggtgtgtagtgtgggagcatgttattacagggtgtgtagtgtgggagcatgttattacagggcgtgtagtgtgggagcatgttattacagggtgtgtagtgggggagcatgttattacagggcgtttagtgtgggagcatgttattacagggtgtgtagtgggggagcatgttattacagggtgtgtagtgtgggagcatgttattacagggtgtgtagtgtgggagaatgttattacagggtgtgtagtgtgggagcatgtttttacagggtgtgtagtgtgggagcatgttattacagggtgtgtagtgtgggagcatgttattacagggtgtgtagtgtgggagcatgttattacagggtgtgtagtggggtagcatgttattacagggcgtgtagtgtgggagcatgttattacagggtatgtagtgggggagcatgttattacagggcgtgtagtgtgggagcatgttattacagggtgtgtagtgggggagcatgttattacagggtgtgtagtgtgggagcatgttattacagggtgtgtagtgtgggagcatgttattacagggtgtgtagtgtgggagcatgttattacagggtgtgtagtgtgggagcatgttattacagggtgtgtagtgtgggagcatgttattacagggtgtgtagtgggggagcatgttattacagggtgtgtagtgtgggagcatgttattacagggtgtgtagtgtgggagcatgttattacagggtgtgtagtgggggagcatgttattacagggtgtgtagtgtgggtaGACATAAAACATGTTCCTTTTAAAATAACAGTTAAGCAAATTCTTTTGTATGCAAATCTACAAAGGTTGACTGCATTATGTACAGTAAATGCTGACTGCTGAGTGCAGCCAGTGGACGTGGGACTCCTGAAGGTCGTCTCACACCAGGTCCATGAGGCATTCATGATGTCACAGGGGTCACGGACTCAGAGCTCCGTCATCAGGAGAGCCCTGAGAATCTTCTCTCTGCCCAACCTCATCTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249514 lncRNA upstream 10692 6434447 ~ 6439646 (+) True G218839
TU249458 lncRNA upstream 43252 6344845 ~ 6407086 (+) True G218805
TU249460 lncRNA upstream 95858 6353777 ~ 6354480 (+) True G218807
TU249454 lncRNA upstream 108160 6341950 ~ 6342178 (+) True G218801
TU249447 lncRNA upstream 111570 6328378 ~ 6338768 (+) False G218798
TU249531 lncRNA downstream 53992 6509194 ~ 6510051 (+) True LOC110507908
TU249549 lncRNA downstream 61666 6516868 ~ 6545971 (+) True G218862
TU249591 lncRNA downstream 101575 6556777 ~ 6609484 (+) True G218892
TU249641 lncRNA downstream 143025 6598227 ~ 6599147 (+) True G218929
TU249680 lncRNA downstream 245646 6700848 ~ 6701347 (+) True G218966
XM_036967069.1 mRNA upstream 1377 6426134 ~ 6448961 (+) False LOC110508031
XM_036967075.1 mRNA upstream 1377 6426134 ~ 6448961 (+) False LOC110508031
XM_036967081.1 mRNA upstream 1377 6426134 ~ 6448961 (+) False LOC110508031
XM_036967085.1 mRNA upstream 1377 6426134 ~ 6448961 (+) False LOC110508031
XM_036967094.1 mRNA upstream 1377 6426134 ~ 6448961 (+) True LOC110508031
XM_021588519.2 mRNA downstream 37012 6492214 ~ 6496204 (+) True LOC110508070
XM_036967150.1 mRNA downstream 44343 6499545 ~ 6510342 (+) False LOC110507908
XM_021588331.2 mRNA downstream 44355 6499557 ~ 6510342 (+) False LOC110507908
XM_036967143.1 mRNA downstream 44355 6499557 ~ 6510342 (+) False LOC110507908
XM_036967156.1 mRNA downstream 58090 6513292 ~ 6516055 (+) False LOC110508080
TU249359 other upstream 187981 6259937 ~ 6262357 (+) True LOC110534143
TU249353 other upstream 196747 6252557 ~ 6253591 (+) False LOC110535707
TU249354 other upstream 196747 6252557 ~ 6253591 (+) True LOC110535707
TU249357 other upstream 197855 6249374 ~ 6252483 (+) False LOC110535707
TU249596 other downstream 150120 6605322 ~ 6607009 (+) True LOC110520771
TU249650 other downstream 169382 6624584 ~ 6631601 (+) True LOC110507851
TU249685 other downstream 262426 6717628 ~ 6719163 (+) True G218971
TU249730 other downstream 339358 6794560 ~ 6807670 (+) True LOC110507732
TU251120 other downstream 483398 6938600 ~ 6944979 (+) True LOC110520781

Expression Profile