RNA id: TU250920


Basic Information

Item Value
RNA id TU250920
length 3433
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G219970
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6603182 ~ 6607008 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAGTTTGTCTCTTTATTCAGAACAATAAGCGTAAATTATAATACAGGCAAACGGTTAAGACATTCAGAATGGATGGAACAGTAACATACAGTACTCTCCCAGAGTGGTTACTATGGTGATGGAgtacagcgcgagagagagagagagagagagagagaggggatgaagggTCATTCACAACACTAGCTCACATGTCAACATGTAGAGGAGAGAACTATATACACTGTAATGCCTCAGATGTCATAtgctgtcatacacacacacacacacacagtatattgtCTGCACGCACAGATATGAACACTCAGGCACATGCTTGTGCAGAAAGACATGACTACAGACAAAGACGGGCccacacactggcacacagagGCAGATGCAAAAGTCAATAAACAATCTAGCTATGGCCACACAGCATCCTCCCTTTgtgactgaggagaggagagagggggatgctgTATGCTGTCTgccagggacagagggaggagaggagagagggggttgcTGCATGGTCTgccagggacagagggaggagaggagagagggatgaggtagTGGAGGGTTAGAGCtcaacaggggagaggagaaatacATAGCTAGCTGAACTGATGTGTACGAGTCAacttgttcaaaggcacttggAAAACGAGGAAGTCGATTATAGTGGTTTCCAAACGTCAGGATGCGGTTTGGTTTCAGAGAAAAGGCTTGGGTGTGTGTCTGTTAAAACTCTGTACTTACAGTAAGGGAAAAAAACCGATAAAACATATCTGAGTAGAAAATAGCATAAACGTATTTGAGTAAAATAGTTTGGCAACTAAAATCACAGAGTACTTAAAATTACAAAACAAGCCATCTCAAGCAACTGTATAAAAGTGATGCATAGCCAGCCGTTCAGAGCAAAGTATGCCGAAGTCAGTGGTTCAACACACAAAACCTTCATTTAAAACTTCACTGGTAGAGTGCTGCAATATCAACAGTCACCAACAGAGGGGGCTGTATCCCATTATCTGATTCACCAGTCGTGTGGATGGGAAACTGAAgttacacacacactaatctAAGGTACCCTAATGTTGGAAAATTGAAACCTAACAAAATATGTTTTAGtgtcacatacactggatagatgcagccatagtagtacggcgcccctggagcaaatcagggttaagtgccttgctcaagggcacatcgacagatttttcaccgtCTTGGcttgggtattcgaaccagcgatCTTTGCGTTACTGGCCCAccgctctaactgctaggctacctgccgcccaaattaAGACCTGTGGGGGGAAAACTGATCGTAGATCTGTGCAGCATTATACATTAGAGTAGCTTCCTTTCCTGCTGTATGTATATCCTGTCCTAGTTACTGATCTGAAAACACTACTACTCTTTCTACCTAGACCTGCCAGTAGACCTGCCAGTAGACCTGCCAGTAGACCTGCCAGTAGACATCCACCATATTGCTTTGGCTTTATTCCACAGCCCCTGTTTGCTGACGCAGCTCATTTACTAAAGGCATAGCAGTTGTGCATTACATGTTCTCTGGCGTTGTTAAGTTTGTTTTTAGTTCATCTGTATCACTCAGACAAAGTCTCTATGGCATGTCTAGTCAGTGGCCTGTCCATGTAGTGTGGGGCTATGATGATACACAGGAAGGATTAGACATTAGAATGTATGGAGTTCCAACTGTTCCAATCGTTTCCATTCACTGACAGTTCCATTTAGCTCCCAGTACAGATGTACTTCCTGAATGATCTGGATCTATAGCTGGCCAATCCTTCTTCATGTCACTCTGGGGTggggtggtgggaggggaagTAAAGTTATAGTTCAAGGGTCAGAGGTTATTTGAGGTTAAAGACTGCCAATAGCGGGCGCTCCTCCCTCTTCTGCCAggggctcttcttctcctcctcctcctcctctccgtgGTCATCAGGGGCAACAGACAATAGGGCCGGTTGGTCATGCTCAGTCCTGAAGACCACGCCCTCGGTCTCTGTGAgtgggggtggagaggaggaggagggggaggagaggggtgaaggagCCTCTTCCTgtatcatcccctctcctctgtcctcctgctcTACTTGTTGATGTCCCTGTGTGTTCTGCAACCCTGGACCTAAAGGGCTGTCCTGGGGGCTACACTCAGGAGTCTCCCCCTCCAGGTCATCCACATATACCAGCTGGGTGTAGGCCATGGCAGGAGGGCCACTCtttgtcctccccctctctctgtctttctctctttccctctctcctaccttcctctctacctccctccccctccgcCCTGCTCTGGGCTCATTCAGGTCCACCCCGGAGTCCAGACTTGCATCGTTTCCGTTGACATGTCTACCACCACTGTTGTTACCATGGCTACCTCCTCCACCTGGATTCCCCTTGGCTTGCCCAGCCCGCTGCAAGTCTATGTAAGAGTGTCTGATGGCGTTAGACCGACCGTCCAATGAGACGAACCAGGCGCGCGGGTGTGTGAGGGGCTTCCCTCCCCGCAGTTCCATCAATTTCCTCTCAGCCAATAGTGTGTCCTCGCCGTTCATTTGCATAATCCCTGACTGCCCAAGTGCTGACGGGATAGACAGGGACTCTGATAGGCTGCTCCACTCCCCTTGCCCCTCTCCTTGTCCCTGGTTGGCTGAGGCAATAGCATAATCGGCGTGTGTTTGCCCCAGGGGCTGCTGGGAGTGTGAGGCGTTGAGCTCAGCCTGGATGGTCTCCAGGTCACTCTGCTGGTCAGTCTGTAAGAACAGGGCCTGGCCACACAGCGGGTGCTCCCCCGGCAGGCGCATGTAGTGGGCTGGGATCACCAGGGTGGGCCGGATCCTCCTGGGGTAACCGTCTCCTCCACTCAGCAGGTCCACGGAGCCACAACACAGCAGCTGGCCCGgcctggggagggagaggggcagggagccCAGGTGGTCCACAGACCGGGACAGGAGGTAGTCTGGGGGTCTGCGCTCACACCCCTCCCCTCTGATAGGGGAGACAGGTGGGGAGCAGGGCGAGGTAGCCTCACGCACACTAGTCCCGCCCTCCCCAACACCACTCAATTGACTTGCTGACGCCTGCACCTGATTTGAGGAGGAAAGTCTATCTGGGAGCTGATTGATGGATGAGCAGATGGAGGTGTATGATTGGCGGTAGCCGGCATCCGTCCCGGCGGAGAGGGCTGACTTAAACGGGAACGTCTCCACAGACTGACGGTAATCTCTGCTGCGCGGCGTCAGGTTGCCTAGCGACGAGCCATGACGACTTCGGCTGTGGTTTCCTAGAGACATGCGACTGTGGTTGCCATGGGAGACCAGGTCATGGCGATCGCAGGAGGAGGGTTTGAGCATGGGCGTGGTCATGTCGGGTTCTGCTGTCGTAGAGACCAGCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250792 lncRNA downstream 105222 6496695 ~ 6497960 (-) True cf191
TU250752 lncRNA downstream 196114 6344657 ~ 6407068 (-) False G219822
TU250753 lncRNA downstream 196114 6405208 ~ 6407068 (-) True G219822
TU250784 lncRNA downstream 216973 6385989 ~ 6386209 (-) True G219847
TU250745 lncRNA downstream 271188 6327177 ~ 6331994 (-) True G219819
TU250944 lncRNA upstream 31932 6638940 ~ 6642155 (-) True G219988
TU250955 lncRNA upstream 52737 6659745 ~ 6660111 (-) True G219999
TU250881 lncRNA upstream 105172 6712180 ~ 6783455 (-) False G219933
TU250878 lncRNA upstream 105222 6712230 ~ 6783455 (-) True G219933
TU250900 lncRNA upstream 166354 6773362 ~ 6774340 (-) True G219952
XM_036975428.1 mRNA downstream 52784 6527175 ~ 6550398 (-) True LOC110508127
NM_001160659.1 mRNA downstream 103602 6496696 ~ 6499580 (-) False cf191
XM_021581728.2 mRNA downstream 104335 6496695 ~ 6498847 (-) False cf191
XM_036963488.1 mRNA downstream 104638 6496695 ~ 6498544 (-) False cf191
XM_036967130.1 mRNA downstream 111453 6479543 ~ 6491729 (-) False LOC110507902
XM_036967161.1 mRNA upstream 15163 6622171 ~ 6623917 (-) False LOC110507876
XM_021588265.2 mRNA upstream 15163 6622171 ~ 6623967 (-) True LOC110507876
XM_021588207.2 mRNA upstream 49505 6656513 ~ 6656888 (-) True LOC110507843
XM_036967171.1 mRNA upstream 107235 6714243 ~ 6743701 (-) False LOC110507788
XM_036967168.1 mRNA upstream 107235 6714243 ~ 6744634 (-) False LOC110507788
TU250797 other downstream 112167 6486500 ~ 6491015 (-) True LOC110507902
TU250699 other downstream 261569 6329602 ~ 6341613 (-) True LOC110534138
TU250746 other downstream 264369 6332968 ~ 6338813 (-) True G219820
TU250494 other downstream 851088 5751724 ~ 5752094 (-) True G219592
TU250493 other downstream 854468 5748158 ~ 5748714 (-) True G219591
TU251084 other upstream 322983 6929991 ~ 6931881 (-) False LOC110508304
TU251087 other upstream 322983 6929991 ~ 6932356 (-) False LOC110508304
TU251088 other upstream 322983 6929991 ~ 6931881 (-) False LOC110508304
TU251092 other upstream 322983 6929991 ~ 6932356 (-) True LOC110508304
TU251203 other upstream 341790 6948798 ~ 6950956 (-) True LOC118964351

Expression Profile