RNA id: TU249685


Basic Information

Item Value
RNA id TU249685
length 1449
RNA type TUCP
GC content 0.46
exon number 3
gene id G218971
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6717628 ~ 6719163 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tagtagtagtagtattggtggtagtagtagtagtagtattggtagtattggtggtagtagtagtagtagtagtagtagtagtattggtggtagtagtagtggtagtagtagtagtagtactggtggtagtagtagtagtagtagtagtactggtggtagtagtagtagtagtagtagtactggtggtagtagtagtagtactggtggtagtattagtagtattggtggtagtagtagtagtagtagtattggtggtagtagtagtagtagtattggtggtagtagtagtagtagtagtggtgacagtagtagtagtagtattggtgacagtagtagtagtagtagtggtgacagtagtagtattggtggtaatagtagtagtggtgacagtagtcgtattggtggtagtagtagaagtggtgacagtagtagtcgtagtagtggtgacagtagtcgtattggtggtagtagtagtggtgacagtagtagtattggtggtagtagtagtagtggtgacagtagtcgtattggtggtagtagtagtagtagtagtattggtggtagtagtagtagtattggtagtagtagtagtattggtggtagtagtagtagtattggtgacagtagtagtagtagtggtgacagtagtagtattggtggtaatagtagtagtggtgacagtagtcgtattggtggtagtagtagtagtggtgacagtagtcgtattggtggtagtagtagtagtagtattggtgacagtagtagtagtagtggtgacagtagtcgtattggtggtagtagtagtggtgacagtagtagtattggtggtagtagtagtagtagtggtgacagtagtcgtattggtggtagtagtagtagtattggtggtagtagtagtagtattggtggtagtagtagtagtattggtagtagtagtagtattgatggtagtagtagtattggtagtagtagtagtagtagtattggtggtagtagtagtagtattggtagtattggtggtagtattggtggtagtagtagtattggtggtagtagtagtagtagtagtactggtggtagtagtagtagtagtagtagtagtagtagtagtactggtggtagtagtagtagtactggtggtagtagtagtagtactggtggtagtagtagtagtagtagtattggtggtagtagtagtagtagtattggtggtagtagtagtagtagtattggtggtagtagtagtagtagtattggtggtagtagtagtagtagtagtggtgacagtagtcgtattggtggtagtagtagtagtggtgacagtagtcgtattggtggtagtagtagtagtattggtgacagtagtagtagtagtagtagtagtggtgacagtagtcgtattggtggtagtagtagtagtagtattggtgacagtagtagtagtagtag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249680 lncRNA upstream 16281 6700848 ~ 6701347 (+) True G218966
TU249591 lncRNA upstream 108144 6556777 ~ 6609484 (+) True G218892
TU249641 lncRNA upstream 118481 6598227 ~ 6599147 (+) True G218929
TU249549 lncRNA upstream 171657 6516868 ~ 6545971 (+) True G218862
TU249531 lncRNA upstream 207577 6509194 ~ 6510051 (+) True LOC110507908
TU249700 lncRNA downstream 15857 6735020 ~ 6735498 (+) True G218986
TU249611 lncRNA downstream 53176 6772339 ~ 6773043 (+) True LOC110507743
TU249612 lncRNA downstream 54718 6773881 ~ 6777798 (+) True LOC110507774
TU249734 lncRNA downstream 78711 6797874 ~ 6801798 (+) True G219017
TU249735 lncRNA downstream 79205 6798368 ~ 6801932 (+) True G219018
XM_036967163.1 mRNA upstream 4961 6659724 ~ 6712667 (+) False LOC110507826
XM_036967164.1 mRNA upstream 4961 6659724 ~ 6712667 (+) False LOC110507826
XM_036967162.1 mRNA upstream 4961 6693848 ~ 6712667 (+) False LOC110507826
XM_036967165.1 mRNA upstream 4961 6693848 ~ 6712667 (+) True LOC110507826
XM_021588121.2 mRNA upstream 45046 6659726 ~ 6672582 (+) False LOC110507826
XM_036967173.1 mRNA downstream 35676 6754839 ~ 6773064 (+) False LOC110507743
XM_021587964.2 mRNA downstream 35677 6754840 ~ 6773064 (+) False LOC110507743
XM_021587981.2 mRNA downstream 35677 6754840 ~ 6773064 (+) False LOC110507743
XM_036967175.1 mRNA downstream 35677 6754840 ~ 6773064 (+) False LOC110507743
XR_005040319.1 mRNA downstream 35677 6754840 ~ 6773064 (+) False LOC110507743
TU249650 other upstream 86027 6624584 ~ 6631601 (+) True LOC110507851
TU249596 other upstream 110619 6605322 ~ 6607009 (+) True LOC110520771
TU249525 other upstream 262426 6450338 ~ 6455202 (+) True G218842
TU249359 other upstream 455271 6259937 ~ 6262357 (+) True LOC110534143
TU249353 other upstream 464037 6252557 ~ 6253591 (+) False LOC110535707
TU249730 other downstream 75397 6794560 ~ 6807670 (+) True LOC110507732
TU251120 other downstream 219437 6938600 ~ 6944979 (+) True LOC110520781
TU251106 other downstream 259968 6979131 ~ 6986522 (+) False LOC110508323
TU251108 other downstream 260329 6979492 ~ 6986522 (+) False LOC110508323
TU251111 other downstream 260396 6979559 ~ 6986522 (+) False LOC110508323

Expression Profile