RNA id: TU250900


Basic Information

Item Value
RNA id TU250900
length 944
lncRNA type inter_gene
GC content 0.32
exon number 2
gene id G219952
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6773362 ~ 6774340 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCATATGCATATTGCATTGTAACATTACTTAAACAAAGCTTTGAAGAAACAGCAGAGCTTAACTTCTTTAAATCCCTCCAGCTGCTGTGCATTTACGTGTGATTTTAATGATTGCACACAAAATTGGATGGATTTATGAGATCACATTCTGATCAATCTAAACAAAACAAGGCCTTAGAAAAATGTTGCTTTTCAAAAGAGAACATCAAGGCTGTACAAGTACGACAGGGTAGCTGAATATGATAAGGACCTCTTCTACACTAGACATTTGCTAGGAGAGAATGATCCTGTTATAGTGAATGTACTGTGTATGTTAGTTGATATTTTGTATCGTACCTTGCGATCCAGAGCTGCCTCATCTACTGGGATACAGTCATGTGTTTGTTTACTTGAACCCTCACACACCGAACAGATCGGCTCTTCATGCTCCAGACAGAACAGTGTGAGTAGCTTGCTGTGTAGACTGCAGACATGTTTTTTAACTGAAACTCTCACCCGGCATACACAGGTTCTTCAGAGCAAGATCCATCGAATCCTTATAGCATTTTATGCTGCACACTGGACATTCCCATGATTCCATCTGTTTCCAGTATGACTCCAGACAGGCTATACAGCAGCTATGGCCACAGGACAGGAGAACAGGTTCCGTGAGGGTTTCAGAGCGCACAGGACAACAGGTTCCTTGAGGGTTTCAGAGCGCACAGGACAACAGGTTCCTTGAGGGTTTGTGAGCGCACAGGACAGGAGAGATCTTTCTCTGGGACAGATGCCTGGGAGGCCATTTTGTCACTCCCTAATGGCATTTGGAGTGAGGTTACTTTCAATGTGAAAACTCACCCTGGTTTAGTCAGCAGCTTTCTTACCACAGTGTTGATGAATAGTTTTGCAGTTGTAGTTAGAAGACACAGGACTCAAACTATCTTACAGAACAGATACACAAAGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250955 lncRNA downstream 113251 6659745 ~ 6660111 (-) True G219999
TU250944 lncRNA downstream 131207 6638940 ~ 6642155 (-) True G219988
TU250920 lncRNA downstream 166354 6603182 ~ 6607008 (-) True G219970
TU250792 lncRNA downstream 275402 6496695 ~ 6497960 (-) True cf191
TU250753 lncRNA downstream 366294 6405208 ~ 6407068 (-) True G219822
TU251014 lncRNA upstream 41346 6815686 ~ 6815896 (-) True G220056
TU250884 lncRNA upstream 41945 6816285 ~ 6816505 (-) True G219936
TU251021 lncRNA upstream 49569 6823909 ~ 6824217 (-) True G220063
TU251022 lncRNA upstream 50635 6824975 ~ 6825213 (-) True G220064
TU251035 lncRNA upstream 66182 6840522 ~ 6842132 (-) True G220074
XM_036967167.1 mRNA downstream 28689 6714243 ~ 6744673 (-) True LOC110507788
XM_036967168.1 mRNA downstream 28728 6714243 ~ 6744634 (-) False LOC110507788
XM_036967169.1 mRNA downstream 28728 6714243 ~ 6744634 (-) False LOC110507788
XM_036967170.1 mRNA downstream 28728 6714243 ~ 6744634 (-) False LOC110507788
XM_036967171.1 mRNA downstream 29661 6714243 ~ 6743701 (-) False LOC110507788
XM_036967179.1 mRNA upstream 2141 6776481 ~ 6794276 (-) False LOC110507764
XM_036967177.1 mRNA upstream 2141 6776481 ~ 6794278 (-) True LOC110507764
XR_005040324.1 mRNA upstream 91685 6866025 ~ 6869053 (-) False LOC118945258
XR_005040325.1 mRNA upstream 91685 6866025 ~ 6869053 (-) False LOC118945258
XM_021588712.2 mRNA upstream 127138 6901478 ~ 6905095 (-) False LOC110508277
TU250797 other downstream 282347 6486500 ~ 6491015 (-) True LOC110507902
TU250699 other downstream 431749 6329602 ~ 6341613 (-) True LOC110534138
TU250746 other downstream 434549 6332968 ~ 6338813 (-) True G219820
TU250494 other downstream 1021268 5751724 ~ 5752094 (-) True G219592
TU250493 other downstream 1024648 5748158 ~ 5748714 (-) True G219591
TU251084 other upstream 155651 6929991 ~ 6931881 (-) False LOC110508304
TU251087 other upstream 155651 6929991 ~ 6932356 (-) False LOC110508304
TU251088 other upstream 155651 6929991 ~ 6931881 (-) False LOC110508304
TU251092 other upstream 155651 6929991 ~ 6932356 (-) True LOC110508304
TU251203 other upstream 174458 6948798 ~ 6950956 (-) True LOC118964351

Expression Profile