RNA id: TU251132


Basic Information

Item Value
RNA id TU251132
length 339
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G220134
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6954149 ~ 6954739 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agagatattagaggcagaagtgctactagtggtaatggtagtagcagtagagatattagaggtagaagtgctactagtggtaatggtagcagtagagatattagaggtagaagtgctactagtggtaacggtagtagtagggatattagaggtagaagtgctactagtagtaatggtagtagcagtagagatattagaggtagaagtgctactagtggtaatggtagtagtagagatattagaggtagaagtgctactagtggtaatggtagtagtagagatattagaggtagaagtgctactagtggtaatggtagtagtagagatattagaggtaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249802 lncRNA upstream 24749 6921101 ~ 6929400 (+) True LOC110508266
TU249856 lncRNA upstream 88498 6862939 ~ 6865651 (+) True G219063
TU249744 lncRNA upstream 137570 6816286 ~ 6816579 (+) True G219026
TU249735 lncRNA upstream 152217 6798368 ~ 6801932 (+) True G219018
TU249734 lncRNA upstream 152351 6797874 ~ 6801798 (+) True G219017
TU251116 lncRNA downstream 22265 6977004 ~ 6977467 (+) False G220125
TU251117 lncRNA downstream 22265 6977004 ~ 6977467 (+) False G220125
TU251118 lncRNA downstream 22265 6977004 ~ 6977467 (+) False G220125
TU251119 lncRNA downstream 22265 6977004 ~ 6977467 (+) True G220125
TU251101 lncRNA downstream 32622 6987361 ~ 6988449 (+) True LOC110508323
XM_036967219.1 mRNA upstream 6173 6937600 ~ 6947976 (+) False LOC110520781
XM_036967182.1 mRNA upstream 24749 6828683 ~ 6929400 (+) False LOC110508266
XM_021588758.2 mRNA downstream 24756 6979495 ~ 6987767 (+) False LOC110508323
XR_005040328.1 mRNA downstream 24756 6979495 ~ 6987767 (+) False LOC110508323
XM_021588767.2 mRNA downstream 26753 6981492 ~ 6987767 (+) False LOC110508323
XM_021588780.2 mRNA downstream 38328 6993067 ~ 6996424 (+) True them4
XM_036967264.1 mRNA downstream 61952 7016691 ~ 7045216 (+) False LOC110520784
TU251120 other upstream 9170 6938600 ~ 6944979 (+) True LOC110520781
TU249730 other upstream 146479 6794560 ~ 6807670 (+) True LOC110507732
TU249685 other upstream 234986 6717628 ~ 6719163 (+) True G218971
TU249650 other upstream 322548 6624584 ~ 6631601 (+) True LOC110507851
TU249596 other upstream 347140 6605322 ~ 6607009 (+) True LOC110520771
TU251106 other downstream 24392 6979131 ~ 6986522 (+) False LOC110508323
TU251108 other downstream 24753 6979492 ~ 6986522 (+) False LOC110508323
TU251111 other downstream 24820 6979559 ~ 6986522 (+) False LOC110508323
TU251107 other downstream 26830 6981569 ~ 6986522 (+) False LOC110508323
TU251468 other downstream 393553 7348292 ~ 7353630 (+) False LOC110536044

Expression Profile