RNA id: TU251119


Basic Information

Item Value
RNA id TU251119
length 344
lncRNA type antisense_over
GC content 0.47
exon number 2
gene id G220125
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6977004 ~ 6977467 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCCTAATGCTATCAAGAGAAAACAAATCAGTGGAATGCTAACAGAAAAAGAGAACAAAAAATACCCAGCTCTGCTCATCTCATCTTTGGGGCCTCAGGTTTGGGTTCTTCTGGTTTGGGGGCAGCCTCTTGTTTAGGGGCTTCTTTAGGAGAATCAGGTTTGGGTTCTTCTGGTTTGGGGGCAGCCTCTTGTTTAGGGGCTTCTTTAGGAGAATCAGGTTTGGGTTCGTCTGGTTTGGAGGCTTCTTTAGGAGAATCAGGTTTGGGAGCATCTGGTTTGGATTCTTCTGGTTTGGGGGCATCTGGTTTTGGAGCGGCCTCTTGTTTAGGCGGTTCATCTCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251128 lncRNA upstream 22265 6954149 ~ 6954739 (+) False G220134
TU251101 lncRNA downstream 9894 6987361 ~ 6988449 (+) True LOC110508323
TU251163 lncRNA downstream 63549 7041016 ~ 7044360 (+) True LOC110520784
TU251182 lncRNA downstream 102213 7079680 ~ 7079902 (+) True G220178
TU251189 lncRNA downstream 124831 7102298 ~ 7103268 (+) True G220184
TU251190 lncRNA downstream 126288 7103755 ~ 7103963 (+) True G220185
XM_036967219.1 mRNA upstream 29028 6937600 ~ 6947976 (+) False LOC110520781
XM_036967182.1 mRNA upstream 47604 6828683 ~ 6929400 (+) False LOC110508266
XM_021588758.2 mRNA downstream 2028 6979495 ~ 6987767 (+) False LOC110508323
XR_005040328.1 mRNA downstream 2028 6979495 ~ 6987767 (+) False LOC110508323
XM_021588767.2 mRNA downstream 4025 6981492 ~ 6987767 (+) False LOC110508323
XM_021588780.2 mRNA downstream 15600 6993067 ~ 6996424 (+) True them4
XM_036967264.1 mRNA downstream 39224 7016691 ~ 7045216 (+) False LOC110520784
TU251120 other upstream 32025 6938600 ~ 6944979 (+) True LOC110520781
TU249730 other upstream 169334 6794560 ~ 6807670 (+) True LOC110507732
TU249685 other upstream 257841 6717628 ~ 6719163 (+) True G218971
TU249650 other upstream 345403 6624584 ~ 6631601 (+) True LOC110507851
TU249596 other upstream 369995 6605322 ~ 6607009 (+) True LOC110520771
TU251106 other downstream 1664 6979131 ~ 6986522 (+) False LOC110508323
TU251108 other downstream 2025 6979492 ~ 6986522 (+) False LOC110508323
TU251111 other downstream 2092 6979559 ~ 6986522 (+) False LOC110508323
TU251107 other downstream 4102 6981569 ~ 6986522 (+) False LOC110508323
TU251468 other downstream 370825 7348292 ~ 7353630 (+) False LOC110536044

Expression Profile