RNA id: TU251268


Basic Information

Item Value
RNA id TU251268
length 4849
lncRNA type antisense_over
GC content 0.43
exon number 4
gene id G220229
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7019976 ~ 7061831 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCATCAACATTTCAGTTTATTCAAATAATCATTTCAATGTTGTTCATGTGTCAGATAATGACAAATTACAATAACTGGCAGTGCTTCACTCCAAAATGATTAAGACATATTCTATAAAGATTTATTTCAAATGTTAGAAATAGAACAGGACAACTGGACTAGCAGTTCTGGAGCTATATGAAAAATACAACTAACAATTCTGAAACATATCTGCTTTACGAAACAAATCACCATTTGAATTACCACTTCTTTTTTATATTCATATCAGCTCTCCAGGTGTTCTAACATTATAACACCCTCTTAATGACAGACACTGACAGTAATACTGAAATATTATGTGCACTCGGATACCATACATTAATTGGTTGTCATCTGGCCATGCTAGACAATATGGAATAAATGGAACTTTCTAACTATAAATTCTGCTTACTCTTACCCACATCCTAACTCCTGTTTGACTAAATCATGCACTTGCTCAACAGTTCTTCTGTATTAGCCAATTGTATCCTTTCTGGCATGGTTATCTAGTGACTACTGCAGAAATGCCCTGACCGCTAATTCGGATTGGCCCACTGCCATCAGAGTAAAACCAAAATCAGGTGAGGAGGAATTTCCTCTTTCTGAGGTGTGGGGACTTGGTTGCCTTGGTGATGGCATTCATGAGCAGTCTGGAGAGGCACATAGGGGAGTcctgggagaaggaggagggagggcaggACTTCTGcaagacagaggaagaggagggcttCCCCTCAAGACAGCGTGTCTGCGACAGCATCACTAGCTGGGTTCACAGTCAAAGAGAGAAGTTATGAAAACAACAATATCAAAAAGCCTGCAACATGCAAAGAGCTACAATATAAAAATTATTGTTTATAACTAACTTAACTCTCAGTCTAAGATCCTGTAGACACTTGATGGCCAATCATGTTCATTTTATCCCAATGGGACAACCTGGTTAATATGAGATATGGGGTTGTCTGTGTGAACCTGTATTATTAAGTGTCGAACTCACCTGTATCTGAACACATGCAGTTCTCTGGTCTGCTGGCAGGGAGCAGCATTGGTCCACTAAGTTCTGGACAGGGAGAGCCACAGGGAAGCTGAGAGAGCAGATTGCAAGATCATCTCAGTAAACTACATCTTTGTTTTACTCGATAATCAAACCAAATCAGTCAAAGGGATTTGTTAGACAGATATGTACAAATGTCCCTGGATCAAACTAGCTGCTGTAATAAGATACTTGTGAAAGTTATTGTATACTATTGTTTTTAAACTTTTGGTAATGTTTTTTGATGCAATGCAAATCTGGAATTTTAATGTCATtaaccacatttccatccacagttttatTACGAGTAAGGTCATACCGTATCAAATAAAACCACAACAACTGGAATGGAAACAGGAATTTTTTGTAAAATTGTATAAATACTGACAGATAATTTGTTCttttgacatggtgggatcttttcgTCTGTAAAATGAGTTATgtgagaaatggcggtggaaattCCTTTATGCGCAactattgatataataaccatcatatccaCGTAAACTTGCAGTCACTCGAtaatatggtgtgtggtccttccactacgactcaggaaactatgcagtttattaggctacagatgaaacaagttatgatgaacttcacagggtggtgaagaTGCACAGTGATGCTCCTTTCCAGTAAATATCGAAGGTTTTATTCTGGTGACATTATGAttgatgcttgactgccatttaaaaaatgtaatactgGTCGCTGTTATCCATAAtaaatctcatcatgtagactagcttacccacactgtatctgctagctgttggctagagcgaatgtgccaagaccagagttgGCACATTTACTATTTATAACAACCGTTTctgaactttagatttttattcaataaaatgaagaaaaaaataaatttCGTGTGCACTACAAAAATCAGCAACAAGTCattttggtggaaacacaccactttTGGGAAAATGCGCAAATTTAAAATCTGTCGCCAGTCGGATGGAAACATAGCTACAGTCACCATCTACTACAGTGAAATGTACCCTTTCTGAAAGGTCTGGTTCTGTCACCCAGAAAGATAAACAATCGGGCTGGGCAGCATAAAAATGTGACTGAGGAGGAAAAAGGTacaattaaacacacacacacacacacacacacacacacacacacacacacaatcaataaACCTAAACAAACCCTTACATCTTGATGATCTTGTATGTTTCACAGATGTGTCCGAGGTTGTGGGTCTGTGGTGCGTCAGAAGCAGAGTCAAGCTTTTGTTCATAGTCTGGATGAGGGGCGAGTGAGGAGAAACAGGTATAcctgtcctcaccttctcccACATCACAACAGGAGGAGTTGTGAGGCCTCCCCTTCTGCTCTTCCTCACAGAACCTGTCAAGCTCCTCACGCCActTCCCTCAGCACAGGGTAGCACGTTCTCCAGTCCCTTACAGCAGTGGTTGAACCCTCTCTCCAGGCGGTTCATGGCCTTTGATTGGCGGGCCAGCCAGCCAAAGCCTGTACGTGGCAGGCACTTGGTGGTGGAGAGGGGTCGGCTGTTGTGTAGGCAGCAGACCAATCCAATGTTGTCGAAAGTGGGGCGTCCAGGGGGGAAACTGATGTCAGAGTCTCTGGGAGTAGCTTGGGGGCTCTTGTGCTTCTCTCCTCTGACAGCACATGGACCAGGCTGGacttGTGACAAGTGTTGGGGTTAAAGGTGAAGCCAGGTTCAGGTATGGGGGTGGTCGGCAGGTAGGTGGGGTCTGGGTTTTCCCTATGGAAACAGCTCAGTCTGGCCCCGCCCTCCTTCTGGCAGCAGTGGTGATGGCGTGTCTTCACTCCGGACTCCTCAGTACAGAATGTGGACAGGGTCTGTTCCCACTGTAAGTGACATATACAAACATCAATTCACACATGAAAAATAGAGATAAAAGAAGTCCTAAAATGGTGAAGATACAACTTTAGTGGGCCTGACTCATGAATGCCTTCCCATctacacagctacacagctaTACAGATAGACTCCAAGGCTAATCTGTTGTGTCTGTATGGGCTTTCCTTCTACTGAGTCTCATCTTCCCTGGGCATCCTCTGTCCTCATCACTACTGCATCTGTGCACCTAGAAGGTGGTTCTGTTGGTACACTAGGAGTGAATGGACCTAAACAGAACTGAACGCAACACGAAAGGACAGAATCCAATGTTGCCACAGAAACACTCACCGCCTGTGTAACGCAGCACAGCGTCACttcctggacctgctgtttccCGTTCCCATGGCAACATGCGCTGTACCAGGACTCTACCCGGTTGACTGCTTCAGCTCGACGACGAAAGTGGCCTCCGCCGTTGCgggggagggagtaggaaggGTACCGCGGACGATGGCTGCTATGGAGACAGATGGCCTGGAGGTTTTTATGGGAGGGCCGGCCAGGGGGGAAGAGGACACTGGGGTAGGACTCCCCAACCGAGCGAGGCCCAGCCATTGGCCGAACTCCAGGTGTAAAGTCTGTGTCCGGGTACTGGGTGATCTCCCCTGGAAGACAAATATACACACAGCACTGTGAGGgcattgaaacacacacacacaaacacacacacacacacacagtacatgtcaCACTAACTTTGCAGGAAATCCTCTATGTCAAAGGAGGCCTCTCTCTGTAACATGCCAGGAAGGGATCTGTTATCTGtggaagggatgagagaatgTAAACACACACGCCCACACGTACTAGTTAATAAATAAGCCATAGCATTCTGACCATGTGATGTCAGTACTGCTGTATACCACCTAGATTTGTGGAAATCATGAAATCAGAATACTTAAAGctaatatgtaactttttgggtgacccaattcacatagaaatgtgacttATAGATCTGTTATTCTCATTGacagcaagtctaagaagcgggaGATCTGTTCTAAGTGTACTATTTCTATGATTCCCATTTCTTAAGTTACATTTTTGCTTCTGGTTTTGtataccagcttcaaacagctgaaaatacaaatatttttgcctattgaaaatgtatttcatagcggtttagatggtacaatgattctcaacactacacattgcttgttttgtcacaaactgaaattaggctaacTATTTGAATTGTATCAAGCAGGAAATTGCGGAGCGacttctgcatattgcacctttaattaACATGGTGTGAATTCTCTAGTCTAGATTTTTGTTATATCTAGAATACTAGTTATACTGTTAGTAGACTTGGACAAAGTTGTTCCACACTAAACTGGTGGAATGGAATGTATCACGTCCAACAAATAATGTTTTTCTTCATGATCTTGATAGGGCATAAAAATTCTGTGCACTTCTAACAGACCATGCACAAACAGAAGGGGAGCCATAAACACATACCAGGACATAAAACAAGGACAGAAAGAACTGATGACTACATGCAAAAACCTTGTAGGCTACAAACCTTCAGACGAGCACACCAGCACTAATGCACACCAGCACGCTAGAACCCAAGACCAACCCATTTTGAGTACTGATACGGGAGTTATCCTTGTCCTCTTCCACTGGACTGTTTCAACTCCCTCTGTTTTGCCCTCTTTCACCCCCCACTCTCTTTCCCTGTGTTTAGCAAAGTTGTTCCAAAGCCACGCCAAGTTCAGGAAACGACTTGACAAACGACAGCTGGAATCCCTTCTTTTCAAACCGTTATGTCCTTATGGAGTGGTATGAAACAGAGAATGAGTGTGTGAGAGCTGTGAGAGAGCATAAATACATGTATGATTGTTCTGTGATtgga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251251 lncRNA downstream 29984 7016495 ~ 7016709 (-) True G220226
TU251246 lncRNA downstream 45214 7000432 ~ 7001479 (-) True G220222
TU251241 lncRNA downstream 57820 6988327 ~ 6988873 (-) True G220217
TU251242 lncRNA downstream 58441 6987369 ~ 6988252 (-) True G220218
TU251215 lncRNA downstream 64596 6959523 ~ 6982097 (-) True G220208
TU251297 lncRNA upstream 11311 7073142 ~ 7073570 (-) True G220253
TU251281 lncRNA upstream 19992 7081823 ~ 7084303 (-) True G220241
TU251283 lncRNA upstream 21512 7083343 ~ 7083691 (-) True G220242
TU251310 lncRNA upstream 44105 7105936 ~ 7106163 (-) True G220265
TU251315 lncRNA upstream 51160 7112991 ~ 7113723 (-) False G220270
XR_002471280.2 mRNA downstream 52848 6988898 ~ 6993845 (-) False LOC110508339
XM_021588793.2 mRNA downstream 52852 6988898 ~ 6993841 (-) False LOC110508339
XR_002471278.2 mRNA downstream 53694 6988898 ~ 6992999 (-) False LOC110508339
XM_036967226.1 mRNA downstream 67504 6976163 ~ 6979189 (-) True zgc:174935
XM_036964028.1 mRNA downstream 92819 6953156 ~ 6953874 (-) True LOC118944481
NM_001281406.1 mRNA upstream 146090 7207921 ~ 7218834 (-) False il6r
XM_036963716.1 mRNA upstream 146090 7207921 ~ 7220075 (-) False il6r
XM_036963718.1 mRNA upstream 146090 7207921 ~ 7220078 (-) False il6r
XM_036963724.1 mRNA upstream 146090 7207921 ~ 7220078 (-) False il6r
XM_036963735.1 mRNA upstream 147863 7209694 ~ 7220080 (-) False il6r
TU251236 other downstream 52887 6988982 ~ 6993806 (-) False LOC110508339
TU251238 other downstream 52887 6988982 ~ 6993806 (-) True LOC110508339
TU251237 other downstream 53173 6988982 ~ 6993520 (-) False LOC110508339
TU251220 other downstream 76193 6967081 ~ 6970500 (-) False G220209
TU251284 other upstream 20914 7082745 ~ 7083691 (-) False G220242
TU251306 other upstream 37507 7099338 ~ 7100170 (-) True G220261
TU251896 other upstream 114561 7176392 ~ 7201421 (-) True G220751
TU251959 other upstream 366839 7428670 ~ 7436171 (-) False LOC110520792
TU251958 other upstream 367003 7428834 ~ 7436171 (-) True LOC110520792

Expression Profile