RNA id: TU251297


Basic Information

Item Value
RNA id TU251297
length 331
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G220253
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7073142 ~ 7073570 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGTAAGACTGCAGAATGTCGATGATGCCGATAAAGACCAGCAACCTCTCTCCTTTAGAGTTCCTGGCTGGGATCCCGCCCATACTGAAATGACTGGTCCTCAGACTCCAGGGCTCCCTTCCCGCGGGCCTCTCCCTGTATAGACTCCATGGCTGTGCAGTATAGACTTTTCTGGGCCTGGGGTCGGCGCTGGTCTGGGGTCACCGCCCCCTCTGACCCCCCACTGTCCCCCATCTGCCCCCcacctcgctccctctctctactagccTGCTCCAGGTTATGGATCCCCACCAGTAGACTGTAGTCCATGATTTTAAAACTCTGCAGGAGc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251256 lncRNA downstream 11311 7019976 ~ 7061831 (-) False G220229
TU251265 lncRNA downstream 11311 7019976 ~ 7061831 (-) False G220229
TU251268 lncRNA downstream 11311 7046693 ~ 7061831 (-) True G220229
TU251251 lncRNA downstream 56433 7016495 ~ 7016709 (-) True G220226
TU251246 lncRNA downstream 71663 7000432 ~ 7001479 (-) True G220222
TU251281 lncRNA upstream 8253 7081823 ~ 7084303 (-) True G220241
TU251283 lncRNA upstream 9773 7083343 ~ 7083691 (-) True G220242
TU251310 lncRNA upstream 32366 7105936 ~ 7106163 (-) True G220265
TU251315 lncRNA upstream 39421 7112991 ~ 7113723 (-) False G220270
TU251316 lncRNA upstream 39595 7113165 ~ 7113723 (-) True G220270
XR_002471280.2 mRNA downstream 79297 6988898 ~ 6993845 (-) False LOC110508339
XM_021588793.2 mRNA downstream 79301 6988898 ~ 6993841 (-) False LOC110508339
XR_002471278.2 mRNA downstream 80143 6988898 ~ 6992999 (-) False LOC110508339
XM_036967226.1 mRNA downstream 93953 6976163 ~ 6979189 (-) True zgc:174935
XM_036964028.1 mRNA downstream 119268 6953156 ~ 6953874 (-) True LOC118944481
NM_001281406.1 mRNA upstream 134351 7207921 ~ 7218834 (-) False il6r
XM_036963716.1 mRNA upstream 134351 7207921 ~ 7220075 (-) False il6r
XM_036963718.1 mRNA upstream 134351 7207921 ~ 7220078 (-) False il6r
XM_036963724.1 mRNA upstream 134351 7207921 ~ 7220078 (-) False il6r
XM_036963735.1 mRNA upstream 136124 7209694 ~ 7220080 (-) False il6r
TU251257 other downstream 11311 7019976 ~ 7061831 (-) False G220229
TU251259 other downstream 11311 7019976 ~ 7061831 (-) False G220229
TU251262 other downstream 11311 7019976 ~ 7061831 (-) False G220229
TU251255 other downstream 11311 7046693 ~ 7061831 (-) False G220229
TU251236 other downstream 79336 6988982 ~ 6993806 (-) False LOC110508339
TU251284 other upstream 9175 7082745 ~ 7083691 (-) False G220242
TU251306 other upstream 25768 7099338 ~ 7100170 (-) True G220261
TU251896 other upstream 102822 7176392 ~ 7201421 (-) True G220751
TU251959 other upstream 355100 7428670 ~ 7436171 (-) False LOC110520792
TU251958 other upstream 355264 7428834 ~ 7436171 (-) True LOC110520792

Expression Profile