RNA id: TU251284


Basic Information

Item Value
RNA id TU251284
length 515
RNA type TUCP
GC content 0.60
exon number 4
gene id G220242
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7082745 ~ 7083691 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTGAGTCTACAGGGGCTCCTGTGTCCATGTCCATTGACTCTGCACCAAACTCTCCACCCTGCATGGACATCTGTAGAGCATAGGCAATCTGCTCGTCCTCCGTCATGCGGCTGAAGTCGGGCATAGCGGGCGTGGCCGTGTCAGCCTGGGGGACTGACATCTTCAGCAGAGCTTCGTCTGACTCGTCAGCGGTAGGCGAGGGAACCCCGGCCTCAGCAGCAGACACCACTGCTGCCCTGCGAGTCTCATCCTCCTGCCTTTGTCTCTGCTCCTCCATAGACACCCTCAGAGCCAGTGCCAGCTCTGGGTCTGCACTGGGGTCCACTCCAAACTCAAAGTCACTGGACCCCAGGCCCAGCATGGCTCCTCCCTCCCCAGCAAGgataggagaggacagtagggcaTCAGCCAGACTGGGGCCTGGAGGCACTGTCACAAGGTGGGACCCTGCTCCTTCCTTCCCATTCAGAGTGTTGATGAAGGCCGTCAGCTTTTCTGTGTTCACCTCCTGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251297 lncRNA downstream 9175 7073142 ~ 7073570 (-) True G220253
TU251256 lncRNA downstream 20914 7019976 ~ 7061831 (-) False G220229
TU251265 lncRNA downstream 20914 7019976 ~ 7061831 (-) False G220229
TU251268 lncRNA downstream 20914 7046693 ~ 7061831 (-) True G220229
TU251251 lncRNA downstream 66036 7016495 ~ 7016709 (-) True G220226
TU251310 lncRNA upstream 22245 7105936 ~ 7106163 (-) True G220265
TU251315 lncRNA upstream 29300 7112991 ~ 7113723 (-) False G220270
TU251316 lncRNA upstream 29474 7113165 ~ 7113723 (-) True G220270
TU251318 lncRNA upstream 31912 7115603 ~ 7115892 (-) True G220272
TU251324 lncRNA upstream 34791 7118482 ~ 7118720 (-) True G220278
XR_002471280.2 mRNA downstream 88900 6988898 ~ 6993845 (-) False LOC110508339
XM_021588793.2 mRNA downstream 88904 6988898 ~ 6993841 (-) False LOC110508339
XR_002471278.2 mRNA downstream 89746 6988898 ~ 6992999 (-) False LOC110508339
XM_036967226.1 mRNA downstream 103556 6976163 ~ 6979189 (-) True zgc:174935
XM_036964028.1 mRNA downstream 128871 6953156 ~ 6953874 (-) True LOC118944481
NM_001281406.1 mRNA upstream 124230 7207921 ~ 7218834 (-) False il6r
XM_036963716.1 mRNA upstream 124230 7207921 ~ 7220075 (-) False il6r
XM_036963718.1 mRNA upstream 124230 7207921 ~ 7220078 (-) False il6r
XM_036963724.1 mRNA upstream 124230 7207921 ~ 7220078 (-) False il6r
XM_036963735.1 mRNA upstream 126003 7209694 ~ 7220080 (-) False il6r
TU251257 other downstream 20914 7019976 ~ 7061831 (-) False G220229
TU251259 other downstream 20914 7019976 ~ 7061831 (-) False G220229
TU251262 other downstream 20914 7019976 ~ 7061831 (-) False G220229
TU251255 other downstream 20914 7046693 ~ 7061831 (-) False G220229
TU251236 other downstream 88939 6988982 ~ 6993806 (-) False LOC110508339
TU251306 other upstream 15647 7099338 ~ 7100170 (-) True G220261
TU251896 other upstream 92701 7176392 ~ 7201421 (-) True G220751
TU251959 other upstream 344979 7428670 ~ 7436171 (-) False LOC110520792
TU251958 other upstream 345143 7428834 ~ 7436171 (-) True LOC110520792
TU252079 other upstream 433509 7517200 ~ 7524492 (-) False LOC110508454

Expression Profile