RNA id: TU251306



Basic Information


Item Value
RNA id TU251306
length 290
RNA type TUCP
GC content 0.39
exon number 2
gene id G220261
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7099338 ~ 7100170 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CATGGTAACTAATGCACAGTGGGCAGTGCTGGGGGTGGCACAACGGGCCGCTCTTGGCAATGCTCTGGGTGTGGCCTATGACCGAGTGGCCTATGACCGCACAGAACCGACTACAAACCCACTCAGAAACCTGCCCCAACTCTCAGGAGCATCTATGCTGGGAACTCTGGGAGTTGGAGTCTTTATGCGGCCCTTGTTCCTACTGCTGGGGTTTGTCCTGTAGTGAAACTACACATCCAATAGACACGCATGACATATGGAACTACTCATGCATGTGTTGAACAAGAAGA

Function


GO: NA

KEGG:

id description

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU251281 lncRNA downstream 15035 7081823 ~ 7084303 (-) True G220241
TU251283 lncRNA downstream 15647 7083343 ~ 7083691 (-) True G220242
TU251297 lncRNA downstream 25768 7073142 ~ 7073570 (-) True G220253
TU251256 lncRNA downstream 37507 7019976 ~ 7061831 (-) False G220229
TU251265 lncRNA downstream 37507 7019976 ~ 7061831 (-) False G220229
TU251310 lncRNA upstream 5766 7105936 ~ 7106163 (-) True G220265
TU251315 lncRNA upstream 12821 7112991 ~ 7113723 (-) False G220270
TU251316 lncRNA upstream 12995 7113165 ~ 7113723 (-) True G220270
TU251318 lncRNA upstream 15433 7115603 ~ 7115892 (-) True G220272
TU251324 lncRNA upstream 18312 7118482 ~ 7118720 (-) True G220278
XR_002471280.2 mRNA downstream 105493 6988898 ~ 6993845 (-) False LOC110508339
XM_021588793.2 mRNA downstream 105497 6988898 ~ 6993841 (-) False LOC110508339
XR_002471278.2 mRNA downstream 106339 6988898 ~ 6992999 (-) False LOC110508339
XM_036967226.1 mRNA downstream 120149 6976163 ~ 6979189 (-) True zgc:174935
XM_036964028.1 mRNA downstream 145464 6953156 ~ 6953874 (-) True LOC118944481
NM_001281406.1 mRNA upstream 107751 7207921 ~ 7218834 (-) False il6r
XM_036963716.1 mRNA upstream 107751 7207921 ~ 7220075 (-) False il6r
XM_036963718.1 mRNA upstream 107751 7207921 ~ 7220078 (-) False il6r
XM_036963724.1 mRNA upstream 107751 7207921 ~ 7220078 (-) False il6r
XM_036963735.1 mRNA upstream 109524 7209694 ~ 7220080 (-) False il6r
TU251284 other downstream 15647 7082745 ~ 7083691 (-) False G220242
TU251257 other downstream 37507 7019976 ~ 7061831 (-) False G220229
TU251259 other downstream 37507 7019976 ~ 7061831 (-) False G220229
TU251262 other downstream 37507 7019976 ~ 7061831 (-) False G220229
TU251255 other downstream 37507 7046693 ~ 7061831 (-) False G220229
TU251896 other upstream 76222 7176392 ~ 7201421 (-) True G220751
TU251959 other upstream 328500 7428670 ~ 7436171 (-) False LOC110520792
TU251958 other upstream 328664 7428834 ~ 7436171 (-) True LOC110520792
TU252079 other upstream 417030 7517200 ~ 7524492 (-) False LOC110508454
TU252080 other upstream 417030 7517200 ~ 7524492 (-) True LOC110508454

Expression Profile