RNA id: TU251310


Basic Information

Item Value
RNA id TU251310
length 228
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G220265
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7105936 ~ 7106163 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAACTGTGTTGGTTGTGACCTCCATAATGGTTAGAACTATGTTAGTTGTGGCCTCCATAATGGTTAGAACTGTGTTAGTTGTGGCCTCCATAATGGTTAGAACTGTGTTGGTTGTGACCTCCATAATGGTTAGAACTGTGTTGGTTGTGGCCTCCATAATGGTTAGAACTGTGTTGGTTGTGACCTCCATAATGGTTAGAACTGTGTTGGTTGTGGCCTCCATAATGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251281 lncRNA downstream 21633 7081823 ~ 7084303 (-) True G220241
TU251283 lncRNA downstream 22245 7083343 ~ 7083691 (-) True G220242
TU251297 lncRNA downstream 32366 7073142 ~ 7073570 (-) True G220253
TU251256 lncRNA downstream 44105 7019976 ~ 7061831 (-) False G220229
TU251265 lncRNA downstream 44105 7019976 ~ 7061831 (-) False G220229
TU251315 lncRNA upstream 6828 7112991 ~ 7113723 (-) False G220270
TU251316 lncRNA upstream 7002 7113165 ~ 7113723 (-) True G220270
TU251318 lncRNA upstream 9440 7115603 ~ 7115892 (-) True G220272
TU251324 lncRNA upstream 12319 7118482 ~ 7118720 (-) True G220278
TU251327 lncRNA upstream 14124 7120287 ~ 7120503 (-) True G220281
XR_002471280.2 mRNA downstream 112091 6988898 ~ 6993845 (-) False LOC110508339
XM_021588793.2 mRNA downstream 112095 6988898 ~ 6993841 (-) False LOC110508339
XR_002471278.2 mRNA downstream 112937 6988898 ~ 6992999 (-) False LOC110508339
XM_036967226.1 mRNA downstream 126747 6976163 ~ 6979189 (-) True zgc:174935
XM_036964028.1 mRNA downstream 152062 6953156 ~ 6953874 (-) True LOC118944481
NM_001281406.1 mRNA upstream 101758 7207921 ~ 7218834 (-) False il6r
XM_036963716.1 mRNA upstream 101758 7207921 ~ 7220075 (-) False il6r
XM_036963718.1 mRNA upstream 101758 7207921 ~ 7220078 (-) False il6r
XM_036963724.1 mRNA upstream 101758 7207921 ~ 7220078 (-) False il6r
XM_036963735.1 mRNA upstream 103531 7209694 ~ 7220080 (-) False il6r
TU251306 other downstream 5766 7099338 ~ 7100170 (-) True G220261
TU251284 other downstream 22245 7082745 ~ 7083691 (-) False G220242
TU251257 other downstream 44105 7019976 ~ 7061831 (-) False G220229
TU251259 other downstream 44105 7019976 ~ 7061831 (-) False G220229
TU251262 other downstream 44105 7019976 ~ 7061831 (-) False G220229
TU251896 other upstream 70229 7176392 ~ 7201421 (-) True G220751
TU251959 other upstream 322507 7428670 ~ 7436171 (-) False LOC110520792
TU251958 other upstream 322671 7428834 ~ 7436171 (-) True LOC110520792
TU252079 other upstream 411037 7517200 ~ 7524492 (-) False LOC110508454
TU252080 other upstream 411037 7517200 ~ 7524492 (-) True LOC110508454

Expression Profile