RNA id: TU251316


Basic Information

Item Value
RNA id TU251316
length 383
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G220270
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7112991 ~ 7113723 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAAGGCACTGGTTTAATGGTACTGATTGACAAGAATCTGAatgtgaaaatgtattaaaagatTACAACTTTAAGAAGAGTTAAAGTGATGGAATTAAGGCAGAGATAATGCAGCAGCATCCTGATCTGGGGGTTTGGGTAGTCCTGAGTGCTGTCCCTGTCTCTGGTGGTTGTGTCCAAATAGCTTGGTTAAGGGATGGGTAGTCCTGAGTGCTGTCCCAAAAAAGGAAAGAGATAGGGAAGAGAGAATGAAAAGGATGTAGCAAGCAGTATTTACAAATGTCTGGTGGTCAGGTCCTCAGTGACAATCACAGTATCTACGAATGTCTGGTGGTCAGGTCCTCAGTGACAATCACAGTATCTACGAATGTCTGATGGTCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251310 lncRNA downstream 7002 7105936 ~ 7106163 (-) True G220265
TU251281 lncRNA downstream 28862 7081823 ~ 7084303 (-) True G220241
TU251283 lncRNA downstream 29474 7083343 ~ 7083691 (-) True G220242
TU251297 lncRNA downstream 39595 7073142 ~ 7073570 (-) True G220253
TU251268 lncRNA downstream 51334 7046693 ~ 7061831 (-) True G220229
TU251318 lncRNA upstream 1880 7115603 ~ 7115892 (-) True G220272
TU251324 lncRNA upstream 4759 7118482 ~ 7118720 (-) True G220278
TU251327 lncRNA upstream 6564 7120287 ~ 7120503 (-) True G220281
TU251860 lncRNA upstream 41022 7154745 ~ 7155223 (-) True G220722
TU251877 lncRNA upstream 44862 7158585 ~ 7219402 (-) True il6r
XR_002471280.2 mRNA downstream 119320 6988898 ~ 6993845 (-) False LOC110508339
XM_021588793.2 mRNA downstream 119324 6988898 ~ 6993841 (-) False LOC110508339
XR_002471278.2 mRNA downstream 120166 6988898 ~ 6992999 (-) False LOC110508339
XM_036967226.1 mRNA downstream 133976 6976163 ~ 6979189 (-) True zgc:174935
XM_036964028.1 mRNA downstream 159291 6953156 ~ 6953874 (-) True LOC118944481
NM_001281406.1 mRNA upstream 94198 7207921 ~ 7218834 (-) False il6r
XM_036963716.1 mRNA upstream 94198 7207921 ~ 7220075 (-) False il6r
XM_036963718.1 mRNA upstream 94198 7207921 ~ 7220078 (-) False il6r
XM_036963724.1 mRNA upstream 94198 7207921 ~ 7220078 (-) False il6r
XM_036963735.1 mRNA upstream 95971 7209694 ~ 7220080 (-) False il6r
TU251306 other downstream 12995 7099338 ~ 7100170 (-) True G220261
TU251284 other downstream 29474 7082745 ~ 7083691 (-) False G220242
TU251259 other downstream 51334 7019976 ~ 7061831 (-) False G220229
TU251896 other upstream 62669 7176392 ~ 7201421 (-) True G220751
TU251959 other upstream 314947 7428670 ~ 7436171 (-) False LOC110520792
TU251958 other upstream 315111 7428834 ~ 7436171 (-) True LOC110520792
TU252079 other upstream 403477 7517200 ~ 7524492 (-) False LOC110508454
TU252080 other upstream 403477 7517200 ~ 7524492 (-) True LOC110508454

Expression Profile