RNA id: TU251327


Basic Information

Item Value
RNA id TU251327
length 217
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G220281
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7120287 ~ 7120503 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttacaaaagtagtttgaaatatttgggcaaagtttacaggcaacttttgaaatgttttgtagtgacgttgcgttttttggcagctgtttttttctggatcaaaggcgtcaaataaatggacatttggatatatatggacggaattaatcgaacaaaaggaccaattgtgatgtttatgggacatattggcgttccaacaaaagaagctcatcaaagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251324 lncRNA downstream 1567 7118482 ~ 7118720 (-) True G220278
TU251318 lncRNA downstream 4395 7115603 ~ 7115892 (-) True G220272
TU251315 lncRNA downstream 6564 7112991 ~ 7113723 (-) False G220270
TU251316 lncRNA downstream 6564 7113165 ~ 7113723 (-) True G220270
TU251310 lncRNA downstream 14124 7105936 ~ 7106163 (-) True G220265
TU251860 lncRNA upstream 34242 7154745 ~ 7155223 (-) True G220722
TU251877 lncRNA upstream 38082 7158585 ~ 7219402 (-) True il6r
TU251930 lncRNA upstream 147974 7268477 ~ 7269155 (-) True G220778
TU251941 lncRNA upstream 160543 7281046 ~ 7283889 (-) True G220786
TU251945 lncRNA upstream 170363 7290866 ~ 7291132 (-) True G220790
XR_002471280.2 mRNA downstream 126442 6988898 ~ 6993845 (-) False LOC110508339
XM_021588793.2 mRNA downstream 126446 6988898 ~ 6993841 (-) False LOC110508339
XR_002471278.2 mRNA downstream 127288 6988898 ~ 6992999 (-) False LOC110508339
XM_036967226.1 mRNA downstream 141098 6976163 ~ 6979189 (-) True zgc:174935
XM_036964028.1 mRNA downstream 166413 6953156 ~ 6953874 (-) True LOC118944481
NM_001281406.1 mRNA upstream 87418 7207921 ~ 7218834 (-) False il6r
XM_036963716.1 mRNA upstream 87418 7207921 ~ 7220075 (-) False il6r
XM_036963718.1 mRNA upstream 87418 7207921 ~ 7220078 (-) False il6r
XM_036963724.1 mRNA upstream 87418 7207921 ~ 7220078 (-) False il6r
XM_036963735.1 mRNA upstream 89191 7209694 ~ 7220080 (-) False il6r
TU251306 other downstream 20117 7099338 ~ 7100170 (-) True G220261
TU251284 other downstream 36596 7082745 ~ 7083691 (-) False G220242
TU251259 other downstream 58456 7019976 ~ 7061831 (-) False G220229
TU251896 other upstream 55889 7176392 ~ 7201421 (-) True G220751
TU251959 other upstream 308167 7428670 ~ 7436171 (-) False LOC110520792
TU251958 other upstream 308331 7428834 ~ 7436171 (-) True LOC110520792
TU252079 other upstream 396697 7517200 ~ 7524492 (-) False LOC110508454
TU252080 other upstream 396697 7517200 ~ 7524492 (-) True LOC110508454

Expression Profile