RNA id: TU251896


Basic Information

Item Value
RNA id TU251896
length 462
RNA type TUCP
GC content 0.47
exon number 5
gene id G220751
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7176392 ~ 7201421 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGCCACATACCTAAACTATACCGCCGTTTCGGTTAGTTAAAATGATTATTCCGATAACTTCTGGTTCTGACATTTTGTGGAAACTGAACTGCGCGTACATCCTAGTGGGGTGTCTGCTGCCTGTTGTAGACACTCACAACATTAACTGTAAGGTGATCCAACATCCTAACTATACAACGACCTATGACCTCCATGAACTACCTGAATCTCTGCCTTTGGCCTATTGCGAGACCCAGTGGTTGGATGAAAACATAACTGTTCTTGCCaatgacaaagagagagacgAAAACCGTACTTTGGCTCAGACCAGTCACTCCATCACTATCTTAGGCTGCCTGGACAGACTGACCTACTCAATGGACTGCACGCTGACTGTGGCACCATTTTGGGACGTGCAGTGCCTCACTAACGGCAGTCATggaacttacagtgccttgcgaaagtatttggcccccttgaac

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251860 lncRNA downstream 21169 7154745 ~ 7155223 (-) True G220722
TU251327 lncRNA downstream 55889 7120287 ~ 7120503 (-) True G220281
TU251324 lncRNA downstream 57672 7118482 ~ 7118720 (-) True G220278
TU251318 lncRNA downstream 60500 7115603 ~ 7115892 (-) True G220272
TU251315 lncRNA downstream 62669 7112991 ~ 7113723 (-) False G220270
TU251930 lncRNA upstream 67056 7268477 ~ 7269155 (-) True G220778
TU251941 lncRNA upstream 79625 7281046 ~ 7283889 (-) True G220786
TU251945 lncRNA upstream 89445 7290866 ~ 7291132 (-) True G220790
TU251946 lncRNA upstream 89876 7291297 ~ 7291551 (-) True G220791
TU251947 lncRNA upstream 90416 7291837 ~ 7292049 (-) True G220792
XR_002471280.2 mRNA downstream 182547 6988898 ~ 6993845 (-) False LOC110508339
XM_021588793.2 mRNA downstream 182551 6988898 ~ 6993841 (-) False LOC110508339
XR_002471278.2 mRNA downstream 183393 6988898 ~ 6992999 (-) False LOC110508339
XM_036967226.1 mRNA downstream 197203 6976163 ~ 6979189 (-) True zgc:174935
XM_036964028.1 mRNA downstream 222518 6953156 ~ 6953874 (-) True LOC118944481
NM_001281406.1 mRNA upstream 6500 7207921 ~ 7218834 (-) False il6r
XM_036963716.1 mRNA upstream 6500 7207921 ~ 7220075 (-) False il6r
XM_036963718.1 mRNA upstream 6500 7207921 ~ 7220078 (-) False il6r
XM_036963724.1 mRNA upstream 6500 7207921 ~ 7220078 (-) False il6r
XM_036963735.1 mRNA upstream 8273 7209694 ~ 7220080 (-) False il6r
TU251306 other downstream 76222 7099338 ~ 7100170 (-) True G220261
TU251284 other downstream 92701 7082745 ~ 7083691 (-) False G220242
TU251257 other downstream 114561 7019976 ~ 7061831 (-) False G220229
TU251959 other upstream 227249 7428670 ~ 7436171 (-) False LOC110520792
TU251958 other upstream 227413 7428834 ~ 7436171 (-) True LOC110520792
TU252079 other upstream 315779 7517200 ~ 7524492 (-) False LOC110508454
TU252080 other upstream 315779 7517200 ~ 7524492 (-) True LOC110508454
TU252088 other upstream 326605 7528026 ~ 7530317 (-) True LOC110508472

Expression Profile