RNA id: TU251437



Basic Information


Item Value
RNA id TU251437
length 647
lncRNA type antisense_over
GC content 0.51
exon number 5
gene id G220368
representative False

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7259535 ~ 7264660 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tccctctctctcagcctcgtttcatccctccctcctgctatctctcaccctccttcttctcctcactCATGACGGTGTGACAGAGGGAAAGCAGCCGGAAGAACTCGTGGCTGTGAAGGTCTCCCAGCTTCACCGACTTCAGCAGACCGTTGTCATAGTAACAGAAGTCAGGGTCCGCCAGGGGGTTGAAGGAAGAGAAGTCTAGCCTCTTTGGCTGTGCTCCCAACGGGTCGATCACCTCACCATAGGCATGTCCATTGATAGAGCACTTGCTGAAGCTCATGATGTTCTGAGTGAGAGTTCCTGTCTTGTCACTGAAGATGTACTCCACCTGTCCCAGTTCCTCGTTGAGAGTGGTGGTCCTGGCTTCAGCTGCTGTGTTACACTGTGGACAGAACATCTTCCTGTCCCAGTTTATAAAGTAACTATGACCCAGCCTAATCACCTCCACACTGACGTAGAGTGAGATGGGCACCACGGTGTTGAGAATGATGACGTAGGACCAGAAGGAGAGGAAAGCAGAGAACAGGAAGTTGTCTACAGGCAGGTCCCAGGCCAGGTAACTCTGGAACAGagaacccacctctctctcccacacagcgTTCCCCACAGCCAGGATCACACCCATACACACCATGAAGCCAAAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU251431 lncRNA upstream 3523 7255218 ~ 7256012 (+) True G220364
TU251426 lncRNA upstream 8021 7250064 ~ 7251514 (+) False G220361
TU251427 lncRNA upstream 8021 7250064 ~ 7251514 (+) True G220361
TU251424 lncRNA upstream 10347 7246462 ~ 7249188 (+) True G220359
TU251414 lncRNA upstream 21807 7228413 ~ 7237728 (+) True G220350
TU251465 lncRNA downstream 36016 7300676 ~ 7300897 (+) True G220395
TU251478 lncRNA downstream 41273 7305933 ~ 7306295 (+) True G220403
TU251481 lncRNA downstream 45915 7310575 ~ 7311140 (+) True G220406
TU251482 lncRNA downstream 46979 7311639 ~ 7312042 (+) True G220407
TU251510 lncRNA downstream 84178 7348838 ~ 7349576 (+) True G220432
XM_036967358.1 mRNA upstream 89092 7161950 ~ 7170443 (+) False LOC110508415
XR_005040361.1 mRNA upstream 145754 7109982 ~ 7113781 (+) False LOC110508400
XR_005040362.1 mRNA upstream 145754 7110344 ~ 7113781 (+) False LOC110508400
XR_005040360.1 mRNA upstream 145754 7110348 ~ 7113781 (+) False LOC110508400
XM_036967325.1 mRNA upstream 160630 7085136 ~ 7098905 (+) True LOC110508380
XM_021621564.2 mRNA downstream 83471 7348131 ~ 7357408 (+) False LOC110536044
XM_021621583.2 mRNA downstream 83471 7348131 ~ 7357408 (+) False LOC110536044
XM_021621592.2 mRNA downstream 83483 7348143 ~ 7357408 (+) False LOC110536044
XM_036967426.1 mRNA downstream 83774 7348434 ~ 7357408 (+) False LOC110536044
XM_036967452.1 mRNA downstream 172351 7437011 ~ 7447882 (+) False LOC118945274
TU251106 other upstream 273013 6979131 ~ 6986522 (+) False LOC110508323
TU251108 other upstream 273013 6979492 ~ 6986522 (+) False LOC110508323
TU251111 other upstream 273013 6979559 ~ 6986522 (+) False LOC110508323
TU251107 other upstream 273013 6981569 ~ 6986522 (+) False LOC110508323
TU251120 other upstream 314556 6938600 ~ 6944979 (+) True LOC110520781
TU251468 other downstream 83632 7348292 ~ 7353630 (+) False LOC110536044
TU251513 other downstream 95008 7359668 ~ 7364446 (+) False G220435
TU251514 other downstream 98638 7363298 ~ 7364446 (+) False G220435
TU251520 other downstream 98638 7363298 ~ 7365285 (+) False G220435
TU251521 other downstream 98638 7363298 ~ 7365285 (+) True G220435

Expression Profile