RNA id: TU251941


Basic Information

Item Value
RNA id TU251941
length 429
lncRNA type intronic
GC content 0.48
exon number 2
gene id G220786
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7281046 ~ 7283889 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtcagacaGGACTGTTTGTTTTAGTAGGTCAGgtggggctgtgtgttttggtaggtcagatggggctgtgtgttttggtaggtcttACATGGCTTTTTTGTTTTGGTAGTTCAGACAGGGCTGTGTATTTTGTTAGGTCAGacaggactgtgtgttttggtaggtcagacaggactgtgtgttttggtaggtcagacggggctgtgtgttttggtaggtcttacatggctgtgtgttttggtaggtcagatgggactgtgtgttttggtaggtcagacggggctgtgtgttttggtaggtcagatgggactgtgtgttttggtaggtcagatgggactgtgtgttttggtaggtcagacggggctgtgtgttttggtaggtcagacaGGACTGTTTGTTTTAGTAGGTCAGgtggggctgtgtgttttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251930 lncRNA downstream 11891 7268477 ~ 7269155 (-) True G220778
TU251877 lncRNA downstream 61644 7158585 ~ 7219402 (-) True il6r
TU251860 lncRNA downstream 125823 7154745 ~ 7155223 (-) True G220722
TU251327 lncRNA downstream 160543 7120287 ~ 7120503 (-) True G220281
TU251324 lncRNA downstream 162326 7118482 ~ 7118720 (-) True G220278
TU251945 lncRNA upstream 6977 7290866 ~ 7291132 (-) True G220790
TU251946 lncRNA upstream 7408 7291297 ~ 7291551 (-) True G220791
TU251947 lncRNA upstream 7948 7291837 ~ 7292049 (-) True G220792
TU251949 lncRNA upstream 14276 7298165 ~ 7298402 (-) True G220794
TU251951 lncRNA upstream 16194 7300083 ~ 7300316 (-) True G220796
XM_036967411.1 mRNA downstream 54970 7224126 ~ 7226076 (-) True LOC118945273
XM_036963735.1 mRNA downstream 60966 7209694 ~ 7220080 (-) False il6r
XM_036963718.1 mRNA downstream 60968 7207921 ~ 7220078 (-) False il6r
XM_036963724.1 mRNA downstream 60968 7207921 ~ 7220078 (-) False il6r
XM_036963716.1 mRNA downstream 60971 7207921 ~ 7220075 (-) False il6r
XM_036975430.1 mRNA upstream 39147 7323036 ~ 7343283 (-) True LOC110536068
XR_005040374.1 mRNA upstream 81528 7365417 ~ 7394498 (-) False LOC110537383
XM_036967433.1 mRNA upstream 81528 7365417 ~ 7394499 (-) True LOC110537383
XM_036967443.1 mRNA upstream 124363 7408252 ~ 7436195 (-) False LOC110520792
XM_021588963.2 mRNA upstream 222312 7506201 ~ 7510860 (-) True LOC110508441
TU251896 other downstream 79625 7176392 ~ 7201421 (-) True G220751
TU251306 other downstream 180876 7099338 ~ 7100170 (-) True G220261
TU251284 other downstream 197355 7082745 ~ 7083691 (-) False G220242
TU251262 other downstream 219215 7019976 ~ 7061831 (-) False G220229
TU251959 other upstream 144781 7428670 ~ 7436171 (-) False LOC110520792
TU251958 other upstream 144945 7428834 ~ 7436171 (-) True LOC110520792
TU252079 other upstream 233311 7517200 ~ 7524492 (-) False LOC110508454
TU252080 other upstream 233311 7517200 ~ 7524492 (-) True LOC110508454
TU252088 other upstream 244137 7528026 ~ 7530317 (-) True LOC110508472

Expression Profile