RNA id: TU251465


Basic Information

Item Value
RNA id TU251465
length 222
lncRNA type intronic
GC content 0.44
exon number 1
gene id G220395
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7300676 ~ 7300897 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagcaacagccccaaaacatcactgctctagaggagatctgcatggaggaatgggccaaaataccagcaacagtgtgtgaaaactttgtgaaaacgtttgacctctgtcattgccaacaaagggtatataacaaagtattgagataaacttttgtcattgaccaaatacttattttccaccataatttgcaaataaattcattaaaaatcctacaatgtgat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251437 lncRNA upstream 36016 7259535 ~ 7264660 (+) False G220368
TU251438 lncRNA upstream 36688 7259535 ~ 7263988 (+) True G220368
TU251436 lncRNA upstream 40301 7259535 ~ 7260375 (+) False G220368
TU251431 lncRNA upstream 44664 7255218 ~ 7256012 (+) True G220364
TU251426 lncRNA upstream 49162 7250064 ~ 7251514 (+) False G220361
TU251478 lncRNA downstream 5036 7305933 ~ 7306295 (+) True G220403
TU251481 lncRNA downstream 9678 7310575 ~ 7311140 (+) True G220406
TU251482 lncRNA downstream 10742 7311639 ~ 7312042 (+) True G220407
TU251510 lncRNA downstream 47941 7348838 ~ 7349576 (+) True G220432
TU251467 lncRNA downstream 54323 7355220 ~ 7357303 (+) True LOC110536044
XM_036967358.1 mRNA upstream 130233 7161950 ~ 7170443 (+) False LOC110508415
XR_005040361.1 mRNA upstream 186895 7109982 ~ 7113781 (+) False LOC110508400
XR_005040362.1 mRNA upstream 186895 7110344 ~ 7113781 (+) False LOC110508400
XR_005040360.1 mRNA upstream 186895 7110348 ~ 7113781 (+) False LOC110508400
XM_036967325.1 mRNA upstream 201771 7085136 ~ 7098905 (+) True LOC110508380
XM_021621564.2 mRNA downstream 47234 7348131 ~ 7357408 (+) False LOC110536044
XM_021621583.2 mRNA downstream 47234 7348131 ~ 7357408 (+) False LOC110536044
XM_021621592.2 mRNA downstream 47246 7348143 ~ 7357408 (+) False LOC110536044
XM_036967426.1 mRNA downstream 47537 7348434 ~ 7357408 (+) False LOC110536044
XM_036967452.1 mRNA downstream 136114 7437011 ~ 7447882 (+) False LOC118945274
TU251106 other upstream 314154 6979131 ~ 6986522 (+) False LOC110508323
TU251108 other upstream 314154 6979492 ~ 6986522 (+) False LOC110508323
TU251111 other upstream 314154 6979559 ~ 6986522 (+) False LOC110508323
TU251107 other upstream 314154 6981569 ~ 6986522 (+) False LOC110508323
TU251120 other upstream 355697 6938600 ~ 6944979 (+) True LOC110520781
TU251468 other downstream 47395 7348292 ~ 7353630 (+) False LOC110536044
TU251513 other downstream 58771 7359668 ~ 7364446 (+) False G220435
TU251514 other downstream 62401 7363298 ~ 7364446 (+) False G220435
TU251520 other downstream 62401 7363298 ~ 7365285 (+) False G220435
TU251521 other downstream 62401 7363298 ~ 7365285 (+) True G220435

Expression Profile