RNA id: TU251481



Basic Information


Item Value
RNA id TU251481
length 566
lncRNA type antisense_over
GC content 0.44
exon number 1
gene id G220406
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7310575 ~ 7311140 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTTACTATAGCCCTTATAGCATAGTATATGCTAAGTTTATTCAGGAAGAGGTTTATACTTGCAGTCAGTGTGAAGCACAATAACTCAACAAAGGTACCCATAATTATTCACAAGTTATCAAACAACAGTAGGGCCTAAACAGGTCAAAGTTTATACACAGGTGTGGTAAGAACATTTGAAGTGCAGGCAACAATTATAATGCATTGTTAATGGCTAGCTAAACTAGCTCAATCAGAATCTCTGCGAAATAAACAAAGAACCTGACATTCAATTGTTTAGCTGGCTAGCCTACATTTGTCGACTGGCTGGCTATGGAACCTACCTTTTCAAGTCCACGCTATGTGCACATTTCTGTCAGCAGCATCCAAGTCTTCTCGCTGGGTTCATGCTGCTGTTTGAGTGTTGATGACACGCCTGCCCTTGTTTGTAAGGCCACGGAGGTAGATGATACAGGCAGGCACTGTGGATGCGCCGTGCTGATACACAGACATGCTGGCGAGGTGAAAGAGCTTTTCTTTCTCCAAccagggagagaaacaggaaggagGGGCGATGCTTACTTCGAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU251478 lncRNA upstream 4280 7305933 ~ 7306295 (+) True G220403
TU251465 lncRNA upstream 9678 7300676 ~ 7300897 (+) True G220395
TU251437 lncRNA upstream 45915 7259535 ~ 7264660 (+) False G220368
TU251438 lncRNA upstream 46587 7259535 ~ 7263988 (+) True G220368
TU251436 lncRNA upstream 50200 7259535 ~ 7260375 (+) False G220368
TU251482 lncRNA downstream 499 7311639 ~ 7312042 (+) True G220407
TU251510 lncRNA downstream 37698 7348838 ~ 7349576 (+) True G220432
TU251467 lncRNA downstream 44080 7355220 ~ 7357303 (+) True LOC110536044
TU251515 lncRNA downstream 48528 7359668 ~ 7365285 (+) False G220435
TU251516 lncRNA downstream 48528 7359668 ~ 7364446 (+) False G220435
XM_036967358.1 mRNA upstream 140132 7161950 ~ 7170443 (+) False LOC110508415
XR_005040361.1 mRNA upstream 196794 7109982 ~ 7113781 (+) False LOC110508400
XR_005040362.1 mRNA upstream 196794 7110344 ~ 7113781 (+) False LOC110508400
XR_005040360.1 mRNA upstream 196794 7110348 ~ 7113781 (+) False LOC110508400
XM_036967325.1 mRNA upstream 211670 7085136 ~ 7098905 (+) True LOC110508380
XM_021621564.2 mRNA downstream 36991 7348131 ~ 7357408 (+) False LOC110536044
XM_021621583.2 mRNA downstream 36991 7348131 ~ 7357408 (+) False LOC110536044
XM_021621592.2 mRNA downstream 37003 7348143 ~ 7357408 (+) False LOC110536044
XM_036967426.1 mRNA downstream 37294 7348434 ~ 7357408 (+) False LOC110536044
XM_036967452.1 mRNA downstream 125871 7437011 ~ 7447882 (+) False LOC118945274
TU251106 other upstream 324053 6979131 ~ 6986522 (+) False LOC110508323
TU251108 other upstream 324053 6979492 ~ 6986522 (+) False LOC110508323
TU251111 other upstream 324053 6979559 ~ 6986522 (+) False LOC110508323
TU251107 other upstream 324053 6981569 ~ 6986522 (+) False LOC110508323
TU251120 other upstream 365596 6938600 ~ 6944979 (+) True LOC110520781
TU251468 other downstream 37152 7348292 ~ 7353630 (+) False LOC110536044
TU251513 other downstream 48528 7359668 ~ 7364446 (+) False G220435
TU251514 other downstream 52158 7363298 ~ 7364446 (+) False G220435
TU251520 other downstream 52158 7363298 ~ 7365285 (+) False G220435
TU251521 other downstream 52158 7363298 ~ 7365285 (+) True G220435

Expression Profile