RNA id: TU251516


Basic Information

Item Value
RNA id TU251516
length 315
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id G220435
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7359668 ~ 7365285 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgcataaactacagtactgcactatgcataaactacagtactgcactatgcataaactacagtactgctgcatgcataaactacagtactgcactatacataaactacagtactgcactatacataaactacagtactgctgcactatacataaactacagtactgcactatacataaactacagtactgctgcactatgcataaactacagtactgcactatacataaactacagtactgcactatacataaactacagtactgctgcactatacataaactacagtactgctgcactatgcataaactacagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251467 lncRNA upstream 2365 7355220 ~ 7357303 (+) True LOC110536044
TU251510 lncRNA upstream 10092 7348838 ~ 7349576 (+) True G220432
TU251482 lncRNA upstream 47626 7311639 ~ 7312042 (+) True G220407
TU251481 lncRNA upstream 48528 7310575 ~ 7311140 (+) True G220406
TU251478 lncRNA upstream 53373 7305933 ~ 7306295 (+) True G220403
TU251523 lncRNA downstream 1017 7365463 ~ 7366848 (+) True G220437
TU251532 lncRNA downstream 13812 7378258 ~ 7378802 (+) True G220445
TU251470 lncRNA downstream 41994 7406440 ~ 7419394 (+) True G220397
TU251552 lncRNA downstream 45896 7410342 ~ 7412750 (+) False G220463
TU251551 lncRNA downstream 46426 7410872 ~ 7412750 (+) False G220463
XM_021621564.2 mRNA upstream 2260 7348131 ~ 7357408 (+) False LOC110536044
XM_021621583.2 mRNA upstream 2260 7348131 ~ 7357408 (+) False LOC110536044
XM_021621592.2 mRNA upstream 2260 7348143 ~ 7357408 (+) False LOC110536044
XM_036967426.1 mRNA upstream 2260 7348434 ~ 7357408 (+) False LOC110536044
XM_036967358.1 mRNA upstream 189225 7161950 ~ 7170443 (+) False LOC110508415
XM_036967452.1 mRNA downstream 72565 7437011 ~ 7447882 (+) False LOC118945274
XM_036967459.1 mRNA downstream 95994 7460440 ~ 7500537 (+) True LOC110508431
XM_021589071.2 mRNA downstream 253922 7618368 ~ 7627967 (+) True LOC110508507
XM_036967633.1 mRNA downstream 576856 7941302 ~ 8086452 (+) True LOC110513974
XM_036967642.1 mRNA downstream 783961 8148407 ~ 8159396 (+) True efna1b
TU251468 other upstream 6038 7348292 ~ 7353630 (+) False LOC110536044
TU251106 other upstream 373146 6979131 ~ 6986522 (+) False LOC110508323
TU251531 other downstream 13812 7378258 ~ 7381563 (+) False G220445
TU251574 other downstream 81923 7446369 ~ 7447877 (+) True LOC118945274
TU252485 other downstream 806261 8170707 ~ 8172223 (+) False LOC110520790
TU252560 other downstream 1034625 8399071 ~ 8489067 (+) False G221299
TU252562 other downstream 1034625 8399071 ~ 8489067 (+) False G221299

Expression Profile