RNA id: TU251523



Basic Information


Item Value
RNA id TU251523
length 838
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G220437
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7365463 ~ 7366848 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGTTAACACACACTAAAATGTCTACTGAAAATGGTTTCCCTAAAATGAAAGTTGTATTTTCACATAAATACATAAAGATGATTGTCACACACTAAGTGTCAGGCCAAACATTCCTGTCTGAAGGATAAAATTAACAAACAAATCCCAGAGTGAGACTACAGGGACATCAAAGAATACCACATAAACAAATACATATAGTTGTGTACAAAGCTGGTGATAGTGGATGAAACGTCAGGTAACTGAAATGCATGCAAAAATGTGGATCATGTCAACAAGACTTCTTGCAAGGTTAGTAAGTACTTGTCAGAATGAATCATCTTCATTTCCTTTAGACTTTAAAGTGACATCAGTATTGGTGAGGAAGACTTCTAATCCACACATACTAGACCAAACATCCCACTTTCTCaacgaacaaaataacaaacatggCCTTCATAACTTTGTATAAACCATGACACTTCATAAATAAATAGTTtcttccaccagcctcctctgacacacacacactgcatagtgTCCTATCGAAGGAGTGTGGCCATGGGTGGGTGATGGTCATAGCTGGTGGTCAGTTGATGTGATGTTGTGGTCACCTCAGTTTAAACTTCATACGTGCATTGTGATGTTGGTGTGGTAGTAATGTGGTGGTGGTCTATTTCAGTCCGTTGTTGTTTAGCTTAGCAGGTTTGGTGTCGTTAGGTTAACCTTCTCCCTCGCTTTCACCAGTTCAGGACTTGGTCTCAATGATTTTGATGAAGGGAAGAGGCTTGTTGGACGAGTTGCTGGGCTTCAAAGGCTTActgtggaggagagaaagagagagaacagagagagagagaaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU251515 lncRNA upstream 178 7359668 ~ 7365285 (+) False G220435
TU251516 lncRNA upstream 1017 7359668 ~ 7364446 (+) False G220435
TU251467 lncRNA upstream 8160 7355220 ~ 7357303 (+) True LOC110536044
TU251510 lncRNA upstream 15887 7348838 ~ 7349576 (+) True G220432
TU251482 lncRNA upstream 53421 7311639 ~ 7312042 (+) True G220407
TU251532 lncRNA downstream 11410 7378258 ~ 7378802 (+) True G220445
TU251470 lncRNA downstream 39592 7406440 ~ 7419394 (+) True G220397
TU251552 lncRNA downstream 43494 7410342 ~ 7412750 (+) False G220463
TU251551 lncRNA downstream 44024 7410872 ~ 7412750 (+) False G220463
TU251553 lncRNA downstream 44024 7410872 ~ 7412750 (+) True G220463
XM_021621564.2 mRNA upstream 8055 7348131 ~ 7357408 (+) False LOC110536044
XM_021621583.2 mRNA upstream 8055 7348131 ~ 7357408 (+) False LOC110536044
XM_021621592.2 mRNA upstream 8055 7348143 ~ 7357408 (+) False LOC110536044
XM_036967426.1 mRNA upstream 8055 7348434 ~ 7357408 (+) False LOC110536044
XM_036967358.1 mRNA upstream 195020 7161950 ~ 7170443 (+) False LOC110508415
XM_036967452.1 mRNA downstream 70163 7437011 ~ 7447882 (+) False LOC118945274
XM_036967459.1 mRNA downstream 93592 7460440 ~ 7500537 (+) True LOC110508431
XM_021589071.2 mRNA downstream 251520 7618368 ~ 7627967 (+) True LOC110508507
XM_036967633.1 mRNA downstream 574454 7941302 ~ 8086452 (+) True LOC110513974
XM_036967642.1 mRNA downstream 781559 8148407 ~ 8159396 (+) True efna1b
TU251520 other upstream 178 7363298 ~ 7365285 (+) False G220435
TU251521 other upstream 178 7363298 ~ 7365285 (+) True G220435
TU251513 other upstream 1017 7359668 ~ 7364446 (+) False G220435
TU251514 other upstream 1017 7363298 ~ 7364446 (+) False G220435
TU251468 other upstream 11833 7348292 ~ 7353630 (+) False LOC110536044
TU251531 other downstream 11410 7378258 ~ 7381563 (+) False G220445
TU251574 other downstream 79521 7446369 ~ 7447877 (+) True LOC118945274
TU252485 other downstream 803859 8170707 ~ 8172223 (+) False LOC110520790
TU252560 other downstream 1032223 8399071 ~ 8489067 (+) False G221299
TU252562 other downstream 1032223 8399071 ~ 8489067 (+) False G221299

Expression Profile