RNA id: TU251531


Basic Information

Item Value
RNA id TU251531
length 1499
RNA type TUCP
GC content 0.50
exon number 3
gene id G220445
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7378258 ~ 7381563 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgttactgacagactcacacacagagagagaaagtgagagagagagaatgtgtcttACCTCCTGTATCTGGGAGACTTCATCTGACAACATCTTGAGGCTCTGCTGGTGTCTCTGCTGCTCCTGTCTACGATCCTCCAGATACACCTTGATGACCTCAACCTTTTCAGTCTTCTCCTCAGAGGGTTTGATTGGTTCAGGCTTCAGAGCAGGCCTATCACTGGTTGGCTGCACCAGAGCAAATGCTCGTCCGATTGGCTTGCTCCTGGGTTGTTCTGTGATCCTCCCGACCTGGTTCTGCTGGTGGAGAGTCAGCCTCAGTCTCCTGCACCCATCCTGACGAACGAGACGAAGAAAAGACGAAATGAGAAGCAGTTACAAAGAGCCCGttatgggatggagagagagggatgggggggaaggagggaactACTGGAAATGGaggaggggaaaaagagggaggagaaacTGAGTAATACTGTGtagggcagagaggaagagggaaggtgggagggagagagagagagactgactggaGTCCAGTACCCAGTCACCTAGTGTGTAGGGAGCCAGTGGTTAGAGAAAGAGACTGACTGGAGGCCAGTACCCAGTCAACTAGTGTGTAGGGAGCCagtggttagagagagaaagaaagagagagaacagaagcaTAAAGTTGCTCAGAGACAGAATGTTCCATTTGAATGGCGTTCCAGATCGATGCCAGCACCAATAGGAATCTCCATTAGAATTCTGGGAGACAGTGGGCAGAAAAACTGTACTGAAGTGAGATGGAACATTTCCATGGTAACCAAGTCTCCCAGTAACCATAAACTAAATCTGGCTCCAAAACAATGCAACTTAGGAAGAGTGTGTCCGggtgaaaatacacacacacacacacaaatatacagaaACCTAAACTCTCTCTTCTCACACACATAAAACTGTTCCATGAGTCGCTATGAGGGCAGTGAGGTCTTGTTGTGTGTCTCGCTGGACAGGGAACCCCCATATTACCAGCtgagaggaatgtgtgtgtggttgtgtgtgtgtgtgtggttgtgtgtctcGCTGGACAGGAAATCTCCATATTACCAGCtgagagggatgtgtgtgtggttgtgtgtctcGCTGGACAGGGAATCCCCATATTACCAGCtgagaggaatgtgtgtgtggttgtgtgtctcGCTGGACAGGGAACCCCCATATTACCAGCtgagagggatgtgtgtgtggttgtgtgtgtgtgtgtggttgtgtgtctcGCTGGACAGGGAATCTCCATATTACCAGCtgagagggatgtgtgtgtggttgtgtgtctcGCTGGACAGGGAATCCCCATATTACCAGCtgagagggatgtgtgtgtggttgtttgtgtgtggttgtgtgtctcACTGGACAGGGAACCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251523 lncRNA upstream 11410 7365463 ~ 7366848 (+) True G220437
TU251515 lncRNA upstream 12973 7359668 ~ 7365285 (+) False G220435
TU251516 lncRNA upstream 13812 7359668 ~ 7364446 (+) False G220435
TU251467 lncRNA upstream 20955 7355220 ~ 7357303 (+) True LOC110536044
TU251510 lncRNA upstream 28682 7348838 ~ 7349576 (+) True G220432
TU251470 lncRNA downstream 24877 7406440 ~ 7419394 (+) True G220397
TU251552 lncRNA downstream 28779 7410342 ~ 7412750 (+) False G220463
TU251551 lncRNA downstream 29309 7410872 ~ 7412750 (+) False G220463
TU251553 lncRNA downstream 29309 7410872 ~ 7412750 (+) True G220463
TU251557 lncRNA downstream 32849 7414412 ~ 7417856 (+) True G220466
XM_021621564.2 mRNA upstream 20850 7348131 ~ 7357408 (+) False LOC110536044
XM_021621583.2 mRNA upstream 20850 7348131 ~ 7357408 (+) False LOC110536044
XM_021621592.2 mRNA upstream 20850 7348143 ~ 7357408 (+) False LOC110536044
XM_036967426.1 mRNA upstream 20850 7348434 ~ 7357408 (+) False LOC110536044
XM_036967358.1 mRNA upstream 207815 7161950 ~ 7170443 (+) False LOC110508415
XM_036967452.1 mRNA downstream 55448 7437011 ~ 7447882 (+) False LOC118945274
XM_036967459.1 mRNA downstream 78877 7460440 ~ 7500537 (+) True LOC110508431
XM_021589071.2 mRNA downstream 236805 7618368 ~ 7627967 (+) True LOC110508507
XM_036967633.1 mRNA downstream 559739 7941302 ~ 8086452 (+) True LOC110513974
XM_036967642.1 mRNA downstream 766844 8148407 ~ 8159396 (+) True efna1b
TU251520 other upstream 12973 7363298 ~ 7365285 (+) False G220435
TU251521 other upstream 12973 7363298 ~ 7365285 (+) True G220435
TU251513 other upstream 13812 7359668 ~ 7364446 (+) False G220435
TU251514 other upstream 13812 7363298 ~ 7364446 (+) False G220435
TU251468 other upstream 24628 7348292 ~ 7353630 (+) False LOC110536044
TU251574 other downstream 64806 7446369 ~ 7447877 (+) True LOC118945274
TU252485 other downstream 789144 8170707 ~ 8172223 (+) False LOC110520790
TU252560 other downstream 1017508 8399071 ~ 8489067 (+) False G221299
TU252562 other downstream 1017508 8399071 ~ 8489067 (+) False G221299
TU252563 other downstream 1017508 8399071 ~ 8411530 (+) True G221299

Expression Profile