RNA id: TU251954


Basic Information

Item Value
RNA id TU251954
length 1650
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G220797
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7406437 ~ 7408110 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aggagaacaagGGCTATTCTGAGCACtatagagaaagggagaaggaggagcATAGAGGGACGGAGGAAGGTGGATTAAAGGGTGTATTTTAAGCACTCTATAGACCTGCTATAAAAACACTGTATAAAGGAGGGATCACAggttcagggagggagggggggagagagggatcacaggttcagggagggagggggggagagagagatcacaggttcagggagaaggagaggatgaggaggatgactCACTGCGCTGGACAGTAGACTCCTAGTCGTACTGAAGAGGAGGATTCCAGGAGGAATACAAGACAATAAACATGAATACAGTAACAGAACACCAACACATTCTACCCCTGAGAAGAACAGGCAGGATGACTCACTGTCTAAAGCACTTACAATGACTTACAGGACTAAACGGCAATACACTGTTGCACTCTTTAATTTCATCATTCCTCTGTGGTACTCTATGGTATGCTATGATACTGTAATTAGTATGGTGCTCTTTAATACACAGAATTACTCTGTGGGACTGTTTAATAGGGTCATTATTATGGTTCTTTTCAATATTACTCTTAGTGAAAATGAGTTTGGTCACATGATTACACTGACTGAATAGTGATAGAAGCAACCacgccaacatgtactgtgactaTTTAACACTGTAGCTGGTTAATGTCTGCTTTCACAGGGTGAACAGTGTTTCATCTGATCCTACTGGTGCCCTGTCACACGGACCTGATGCACAGCAAACACTATTCCATCCAGTCCTTAATGGAGATCTGATATGCAAGTGTACTTTTTAAAACACAGTTGGACCAAATGCTGCCAGATATATGAGAATGATGAACAAATGTAGATAGTTTTTCTAATTCATGAAATTAACAATATTCTGCTGAATGTGATGTCATAGTTATCACTGTTTTAGAAACCATATCTGACAGTTTGATTCCTATTCTGCTGTATGTGATGTCATAGTTATCACTGTTTTAGAAACCATATCTGACAGTTTGATTCCTATTCTGCTGTATGTTCTACTACTTGACTGCCTGCCACTACAGATGCATGTATGGAGTTTGCTCTGATACCAATCCTCTCTCACCATttcttcatacacacacactttacacatTGTATTTGTAGCATCCGTAAACTTCTATGCAGTCCTTACAATTAATACTCAGAGAAGCTTGTGAAGATCTTAATCACTATGCCTTAAAAGTTGTTTAAATGATTTTGTAATGCATGATTTTCAGTTGTACTTGTTCCGGTGTACTCTGGATAGATTTTTCTAAATGATTTGTTTCTATTTAATTGGTTTTGAGGGAGATCTGAGAGCTTGTATTTTCATTCAGTGATACAGTAGTTACCACTAAGTGATATTGCTGCAATGTTCATATCTTCCAACTGTTCAGTTGGCTTGAAATATTTTGTATAGAATATGGTGCTCTAGTGTTTCTTAtaccctacacatacagtacttaCTGTTTAGTATATATGAAGCACTAGACTACCATACTGTATGGCTTTGTTGTAACTATGAGTACAGAAGGTGGTACATGATTACTGATTAGTTATTTTACGCTGTGAATTTGTACTTCACAATACCAATCTGTTTTCTATTGAATTAAATATTGCATGGCAATCGAAGTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251980 lncRNA downstream 66576 7339207 ~ 7339861 (-) True G220819
TU251870 lncRNA downstream 86950 7314310 ~ 7319487 (-) True G220729
TU251951 lncRNA downstream 106121 7300083 ~ 7300316 (-) True G220796
TU251949 lncRNA downstream 108035 7298165 ~ 7298402 (-) True G220794
TU251947 lncRNA downstream 114388 7291837 ~ 7292049 (-) True G220792
TU252051 lncRNA upstream 70036 7478146 ~ 7479468 (-) True G220879
TU252063 lncRNA upstream 86513 7494623 ~ 7494865 (-) True G220889
TU252068 lncRNA upstream 90403 7498513 ~ 7502503 (-) False G220892
TU252069 lncRNA upstream 90403 7498513 ~ 7502503 (-) True G220892
TU252072 lncRNA upstream 96223 7504333 ~ 7504614 (-) True G220894
XM_036967433.1 mRNA downstream 11938 7365417 ~ 7394499 (-) True LOC110537383
XR_005040374.1 mRNA downstream 11939 7365417 ~ 7394498 (-) False LOC110537383
XM_036975430.1 mRNA downstream 63154 7323036 ~ 7343283 (-) True LOC110536068
XM_036967387.1 mRNA downstream 85459 7221996 ~ 7320978 (-) True LOC110520786
XM_036967443.1 mRNA upstream 142 7408252 ~ 7436195 (-) False LOC110520792
XM_021588963.2 mRNA upstream 98091 7506201 ~ 7510860 (-) True LOC110508441
XM_021588983.2 mRNA upstream 109085 7517195 ~ 7523801 (-) False LOC110508454
XM_036967476.1 mRNA upstream 109085 7517195 ~ 7523907 (-) False LOC110508454
XM_021589000.2 mRNA upstream 109085 7517195 ~ 7524541 (-) False LOC110508454
TU251896 other downstream 205016 7176392 ~ 7201421 (-) True G220751
TU251306 other downstream 306267 7099338 ~ 7100170 (-) True G220261
TU251284 other downstream 322746 7082745 ~ 7083691 (-) False G220242
TU251262 other downstream 344606 7019976 ~ 7061831 (-) False G220229
TU251959 other upstream 20560 7428670 ~ 7436171 (-) False LOC110520792
TU251958 other upstream 20724 7428834 ~ 7436171 (-) True LOC110520792
TU252079 other upstream 109090 7517200 ~ 7524492 (-) False LOC110508454
TU252080 other upstream 109090 7517200 ~ 7524492 (-) True LOC110508454
TU252088 other upstream 119916 7528026 ~ 7530317 (-) True LOC110508472

Expression Profile