RNA id: TU251470


Basic Information

Item Value
RNA id TU251470
length 2201
lncRNA type antisense_over
GC content 0.43
exon number 3
gene id G220397
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7406440 ~ 7419394 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTCGATTGCCATGCAATATTTAATTCAATAGAAAACAGATTGGTATTGTGAAGTACAAATTCACAGCGTAAAATAACTAATCAGTAATCATGTACCACCTTCTGTACTCATAGTTACAACAAAGCCATACAGTATGGTAGTCTAGTGCTTCATATATACTAAACAGtaagtactgtatgtgtagggtaTAAGAAACACTAGAGCACCATATTCTATACAAAATATTTCAAGCCAACTGAACAGTTGGAAGATATGAACATTGCAGCAATATCACTTAGTGGTAACTACTGTATCACTGAATGAAAATACAAGCTCTCAGATCTCCCTCAAAACCAATTAAATAGAAACAAATCATTTAGAAAAATCTATCCAGAGTACACCGGAACAAGTACAACTGAAAATCATGCATTACAAAATCATTTAAACAACTTTTAAGGCATAGTGATTAAGATCTTCACAAGCTTCTCTGAGTATTAATTGTAAGGACTGCATAGAAGTTTACGGATGCTACAAATACAatgtgtaaagtgtgtgtgtatgaagaaATGGTGAGAGAGGATTGGTATCAGAGCAAACTCCATACATGCATCTGTAGTGGCAGGCAGTCAAGTAGTAGAACATACAGCAGAATAGGAATCAAACTGTCAGATATGGTTTCTAAAACAGTGATAACTATGACATCACATTCAGCAGAATATTGTTAATTTCATGAATTAGAAAAACTATCTACATTTGTTCATCATTCTCATATATCTGGCAGCATTTGGTCCAACTGTGTTTTAAAAAGTACACTTGCATATCAGATCTCCATTAAGGACTGGATGGAATAGTGTTTGCTGTGCATCAGGTCCGTGTGACAGGGCACCAGTAGGATCAGATGAAACACTGTTCACCCTGTGAAAGCAGACATTAACCAGCTACAGTGTTAAAtagtcacagtacatgttggcgtGGTTGCTTCTATCACTATTCAGTCAGTGTAATCATGTGACCAAACTCATTTTCACTAAGAGTAATATTGAAAAGAACCATAATAATGACCCTATTAAACAGTCCCACAGAGTAATTCTGTGTATTAAAGAGCACCATACTAATTACAGTATCATAGCATACCATAGAGTACCACAGAGGAATGATGAAATTAAAGAGTGCAACAGTGTATTGCCGTTTAGTCCTGTAAGTCATTGTAAGTGCTTTAGACAGTGAGTCATCCTGCCTGTTCTTCTCAGGGGTAGAATGTGTTGGTGTTCTGTTACTGTATTCATGTTTATTGTCTTGTATTCCTCCTGGACATCGGAGCTTATTCACCCCCACAATCCTCCTCTTCAGTACGACTAGGAGTCTACTGTCCAGCGCAGTGagtcatcctcctcatcctctccttctccctgaacctgtgatctctctctccccccctccctccctgaacctgtgatccctctctccccccctccctccctgaaccTGTGATCCCTCCTTTATACAGTGTTTTTATAGCAGGTCTATAGAGTGCTTAAAATACACCCTTTAATCCACCTTCCTCCGTCCCTCTATgctcctccttctccctttctctataGTGCTCAGAATAGCCcttgttctcctcctcctaccactACCCGCCACCCCCCTCCCTCTAGCAGGAGCTGGTGTGAAGGTTGCCACTACCCCCCCATCCCTCTAGCAGGAGCTGGTGTGAAGGTtgccactacccccccccccccccacccctctagcAGGAGCTGGTGTGAAGGTTGCCacaaccccccccctccctctagcAGGAGCTGGTGTGAAGGTTGCTCCCAGTGAGGATGGACGTGATGCTGGAGGGGTCGTACAGGCCTTCATCATCTTCGTCAGAGCTCAGAGCCGACGAGTCCAGGGCCTGACGCTGCGCCTGCTGCACCTTCCTCCTGAAACACACCACCATCAGCTTCAGAAATGTTATCTTCATTGTCTATTGTTCACTACAACAGAGGCTGTAGGTGGATCTCAGCAAACATGTGTGGGACAGTTGACTTCTACAGTAGACAGTGTGGTTCCCTGTAGTATCTGTCAGGGAGAGAGCCCTCTGCTGGTCAGATATGGGAACTGACTGGTGTGACATACAATACATACTGTGGGTCTGTAATTTTTGAAGTGTAccttttatcataggtacacttcaactgtgagggacggaatctaaaacaaaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251532 lncRNA upstream 27638 7378258 ~ 7378802 (+) True G220445
TU251523 lncRNA upstream 39592 7365463 ~ 7366848 (+) True G220437
TU251515 lncRNA upstream 41155 7359668 ~ 7365285 (+) False G220435
TU251516 lncRNA upstream 41994 7359668 ~ 7364446 (+) False G220435
TU251467 lncRNA upstream 49137 7355220 ~ 7357303 (+) True LOC110536044
TU251567 lncRNA downstream 8691 7428085 ~ 7429111 (+) True G220475
TU251568 lncRNA downstream 10250 7429644 ~ 7430128 (+) True G220476
TU251613 lncRNA downstream 70760 7490154 ~ 7490423 (+) True G220513
TU251618 lncRNA downstream 75650 7495044 ~ 7495322 (+) True G220518
TU251629 lncRNA downstream 92657 7512051 ~ 7513038 (+) False G220527
XM_021621564.2 mRNA upstream 49032 7348131 ~ 7357408 (+) False LOC110536044
XM_021621583.2 mRNA upstream 49032 7348131 ~ 7357408 (+) False LOC110536044
XM_021621592.2 mRNA upstream 49032 7348143 ~ 7357408 (+) False LOC110536044
XM_036967426.1 mRNA upstream 49032 7348434 ~ 7357408 (+) False LOC110536044
XM_036967358.1 mRNA upstream 235997 7161950 ~ 7170443 (+) False LOC110508415
XM_036967452.1 mRNA downstream 17617 7437011 ~ 7447882 (+) False LOC118945274
XM_036967459.1 mRNA downstream 41046 7460440 ~ 7500537 (+) True LOC110508431
XM_021589071.2 mRNA downstream 198974 7618368 ~ 7627967 (+) True LOC110508507
XM_036967633.1 mRNA downstream 521908 7941302 ~ 8086452 (+) True LOC110513974
XM_036967642.1 mRNA downstream 729013 8148407 ~ 8159396 (+) True efna1b
TU251531 other upstream 24877 7378258 ~ 7381563 (+) False G220445
TU251520 other upstream 41155 7363298 ~ 7365285 (+) False G220435
TU251521 other upstream 41155 7363298 ~ 7365285 (+) True G220435
TU251513 other upstream 41994 7359668 ~ 7364446 (+) False G220435
TU251514 other upstream 41994 7363298 ~ 7364446 (+) False G220435
TU251574 other downstream 26975 7446369 ~ 7447877 (+) True LOC118945274
TU252485 other downstream 751313 8170707 ~ 8172223 (+) False LOC110520790
TU252560 other downstream 979677 8399071 ~ 8489067 (+) False G221299
TU252562 other downstream 979677 8399071 ~ 8489067 (+) False G221299
TU252563 other downstream 979677 8399071 ~ 8411530 (+) True G221299

Expression Profile