RNA id: TU251551


Basic Information

Item Value
RNA id TU251551
length 1596
lncRNA type antisense_over
GC content 0.50
exon number 5
gene id G220463
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7410342 ~ 7412750 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggagaacagaaagaggtctggagggagtggaggagaacagaaagaggtctggagggagtggaggagaagagaggaacagaaagaggtctggagggagtggaggagaagagaggaacagaaagaggtctggagggagtggaagagaacagaggaacagagagaattGGGCTGGTTCAGAAGAAGAGCCACATCTAGGAGAAAGGAGATACTTAGTCATCTAACATGTGAAACAGGTAGAGTGTCAGACTtggaaacacaacacacagacttACTTGAGCTCAGTCTCCAGCGCGGTGACTCTGCCCTGTAAGGCCTCCTTTAGTTCCAtctgttcctccatctctctctgggcCTTCCTCctcaatccctccatcctctctaccTCGGTCTCCCCCTCATCCACCTGTCTCTTCAGAGCCTTCACACGCAGAGACAGCTACAACACAGAGGAAtcagtcagggtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcgcgcgtacctggtctctctgttctgtgtgttggtgtctctcTTCCTCCAGGGTAAAGTTGAGCTCCTTCAGTTTCTTCTCCAGGCGACGCTGAGACGACAACATGGAGTTCttctccctaacacacacacacacacacacacacgtttagcaCAAACATAAACAAGGTGATTCTGGATACAGTGACCAGTTCATAATATCATAAGCTTTACTTGTCATCAATAATGTGAATGTCAATTTAAGGTACACTTCTCTAACTAATAGTGAACTACCATACCAAACACAAAATCAGCTTTTGTTACAAAATATCATATTCCAGACTATGTGGTGCATTAGTTCCGTCTGTAGTTCCTGGGGTGTTCCTGGGGTGTTCCTGGGGTGTGGTGCATTGTGGGACGTGTAGTGTGCGGTGTACCTATCCTCACTGTGGAGGCGTTCCTCCAACTCGTGAACTTTACTCTCCAGCTGAGCCACTCCTACAGAGGAGCGAGACTGACCCTCCATATCAGATACTCTGGTCTTCAACTCCTTCATCTGGACAGAGAGATTTAAGCATAATCAATCATCACTCAGACCTTAAGATCATTTCAGTGGAGACACAGACTTAACGTACATGTCTTTCTAGGGCATTCTTGTCCAGCTCCAGGTCCTGTCTGGAGGATCTCTCCTGCATCAGCTCTGAACGCAGCTGCTCCAtctgcacacagacagacagaggagcgccagacagaggaacaacagacagggtgaggggaGAGTTAACAAATACATTATTTTCCTAGCTTGGTCCTGGTTCTTTCAACTGTTAACCAACAGACTGGTGAAAgtgtgtgtgtgtgtgtacctggtctcTGGTCCTGGTGACTCTGTCAGTGAGTAGCTCCACagatcccttctcctcctccagctccagctccagtcGTTTCATCTTGTCCTCCGTGCTGCGGAGCTCCCTGCTCTTGTCTGTGAGGCTGCTCCTGCTGTTCTCCAGTTCAGCCTCTAGGTGGTGCAGGCGGTTGGTGAGCAGCTCCTTGTCCAGCTGAACATTGTCTCTCTCCTCAACCACAGAGAGCAGCTCCTTCTTCTGACGGGACGCCTGgcgca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251532 lncRNA upstream 32070 7378258 ~ 7378802 (+) True G220445
TU251523 lncRNA upstream 44024 7365463 ~ 7366848 (+) True G220437
TU251515 lncRNA upstream 45587 7359668 ~ 7365285 (+) False G220435
TU251516 lncRNA upstream 46426 7359668 ~ 7364446 (+) False G220435
TU251467 lncRNA upstream 53569 7355220 ~ 7357303 (+) True LOC110536044
TU251557 lncRNA downstream 1662 7414412 ~ 7417856 (+) True G220466
TU251567 lncRNA downstream 15335 7428085 ~ 7429111 (+) True G220475
TU251568 lncRNA downstream 16894 7429644 ~ 7430128 (+) True G220476
TU251613 lncRNA downstream 77404 7490154 ~ 7490423 (+) True G220513
TU251618 lncRNA downstream 82294 7495044 ~ 7495322 (+) True G220518
XM_021621564.2 mRNA upstream 53464 7348131 ~ 7357408 (+) False LOC110536044
XM_021621583.2 mRNA upstream 53464 7348131 ~ 7357408 (+) False LOC110536044
XM_021621592.2 mRNA upstream 53464 7348143 ~ 7357408 (+) False LOC110536044
XM_036967426.1 mRNA upstream 53464 7348434 ~ 7357408 (+) False LOC110536044
XM_036967358.1 mRNA upstream 240429 7161950 ~ 7170443 (+) False LOC110508415
XM_036967452.1 mRNA downstream 24261 7437011 ~ 7447882 (+) False LOC118945274
XM_036967459.1 mRNA downstream 47690 7460440 ~ 7500537 (+) True LOC110508431
XM_021589071.2 mRNA downstream 205618 7618368 ~ 7627967 (+) True LOC110508507
XM_036967633.1 mRNA downstream 528552 7941302 ~ 8086452 (+) True LOC110513974
XM_036967642.1 mRNA downstream 735657 8148407 ~ 8159396 (+) True efna1b
TU251531 other upstream 29309 7378258 ~ 7381563 (+) False G220445
TU251520 other upstream 45587 7363298 ~ 7365285 (+) False G220435
TU251521 other upstream 45587 7363298 ~ 7365285 (+) True G220435
TU251513 other upstream 46426 7359668 ~ 7364446 (+) False G220435
TU251574 other downstream 33619 7446369 ~ 7447877 (+) True LOC118945274
TU252485 other downstream 757957 8170707 ~ 8172223 (+) False LOC110520790
TU252560 other downstream 986321 8399071 ~ 8489067 (+) False G221299
TU252562 other downstream 986321 8399071 ~ 8489067 (+) False G221299
TU252563 other downstream 986321 8399071 ~ 8411530 (+) True G221299

Expression Profile