RNA id: TU251557



Basic Information


Item Value
RNA id TU251557
length 602
lncRNA type antisense_over
GC content 0.53
exon number 2
gene id G220466
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7414412 ~ 7417856 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cacacacctgTTTGGTTCTCTCCTGGGCCTTGGCCAGATCCTCTTTGGCTCGATTTGATTGGCCCCTCAGCCTGTCCATCTCATACTTGAGCTCCGCCTCCTGCTCCTGGTTGGCCTTCTTCAGGGAGATTACCTCCATAACCTTTTTATCGAGCTCCGCCCTTTTCTTCTCTGCCTCTGATTGGGCCTGCTGCAGATCGGCACGCAAACTCTGCAGCTCCTGAAAttacagtggagaacagtgtcAGTGTGTACCTTGTTGAGAGTGTGTGTcagaatcagtgtgtgtgtgtacctggttgagtgtgtgtgtatgactgggGTCTGGTATCTGCTGTTTCATGGTGTTGACCCTCTCCTGTACTTCATTCAGTTCTTCCTCAAGCTCCTCTTTCTCCATGTCAGTGCTGTACTGTTCTCGAAGTGTCTCCATGTCTTTGTCGTGCGTGGCCACCTCGTCCTTCAGAGCCCCCTTCAGGGCcgtcagctccctctctctctgtctcagagaATCCTCCAGCTTCTGCTTCAACATGGACACCTCCAACAGAGACGCTTGACACGTCACCAGGTCCTGtagacacacaatacacacataacaC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU251552 lncRNA upstream 1662 7410342 ~ 7412750 (+) False G220463
TU251551 lncRNA upstream 1662 7410872 ~ 7412750 (+) False G220463
TU251553 lncRNA upstream 1662 7410872 ~ 7412750 (+) True G220463
TU251532 lncRNA upstream 35610 7378258 ~ 7378802 (+) True G220445
TU251523 lncRNA upstream 47564 7365463 ~ 7366848 (+) True G220437
TU251567 lncRNA downstream 10229 7428085 ~ 7429111 (+) True G220475
TU251568 lncRNA downstream 11788 7429644 ~ 7430128 (+) True G220476
TU251613 lncRNA downstream 72298 7490154 ~ 7490423 (+) True G220513
TU251618 lncRNA downstream 77188 7495044 ~ 7495322 (+) True G220518
TU251629 lncRNA downstream 94195 7512051 ~ 7513038 (+) False G220527
XM_021621564.2 mRNA upstream 57004 7348131 ~ 7357408 (+) False LOC110536044
XM_021621583.2 mRNA upstream 57004 7348131 ~ 7357408 (+) False LOC110536044
XM_021621592.2 mRNA upstream 57004 7348143 ~ 7357408 (+) False LOC110536044
XM_036967426.1 mRNA upstream 57004 7348434 ~ 7357408 (+) False LOC110536044
XM_036967358.1 mRNA upstream 243969 7161950 ~ 7170443 (+) False LOC110508415
XM_036967452.1 mRNA downstream 19155 7437011 ~ 7447882 (+) False LOC118945274
XM_036967459.1 mRNA downstream 42584 7460440 ~ 7500537 (+) True LOC110508431
XM_021589071.2 mRNA downstream 200512 7618368 ~ 7627967 (+) True LOC110508507
XM_036967633.1 mRNA downstream 523446 7941302 ~ 8086452 (+) True LOC110513974
XM_036967642.1 mRNA downstream 730551 8148407 ~ 8159396 (+) True efna1b
TU251531 other upstream 32849 7378258 ~ 7381563 (+) False G220445
TU251520 other upstream 49127 7363298 ~ 7365285 (+) False G220435
TU251521 other upstream 49127 7363298 ~ 7365285 (+) True G220435
TU251513 other upstream 49966 7359668 ~ 7364446 (+) False G220435
TU251574 other downstream 28513 7446369 ~ 7447877 (+) True LOC118945274
TU252485 other downstream 752851 8170707 ~ 8172223 (+) False LOC110520790
TU252560 other downstream 981215 8399071 ~ 8489067 (+) False G221299
TU252562 other downstream 981215 8399071 ~ 8489067 (+) False G221299
TU252563 other downstream 981215 8399071 ~ 8411530 (+) True G221299

Expression Profile