RNA id: TU251618


Basic Information

Item Value
RNA id TU251618
length 279
lncRNA type intronic
GC content 0.42
exon number 1
gene id G220518
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7495044 ~ 7495322 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgtccttgggtagacagagggaatctggaaggacatcaaggaatctttgtgttgtctgtgaatttatagcacgacttttgatgttccttggttggggtctgagcagattatttgttgcaattgcaagcgtaataaaatggtggtccgatagtccaagattatgaggaaaaacattaagatccacaacatttattccatgggacaaaactaggtccagcgtatgactgtgacagtgagtgggtccagagacatgttggacaaaacccactgagtcgatga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251613 lncRNA upstream 4621 7490154 ~ 7490423 (+) True G220513
TU251568 lncRNA upstream 64916 7429644 ~ 7430128 (+) True G220476
TU251567 lncRNA upstream 65933 7428085 ~ 7429111 (+) True G220475
TU251557 lncRNA upstream 77188 7414412 ~ 7417856 (+) True G220466
TU251551 lncRNA upstream 82294 7410872 ~ 7412750 (+) False G220463
TU251629 lncRNA downstream 16729 7512051 ~ 7513038 (+) False G220527
TU251633 lncRNA downstream 16729 7512051 ~ 7513038 (+) False G220527
TU251627 lncRNA downstream 16861 7512183 ~ 7513038 (+) True G220527
TU251636 lncRNA downstream 21005 7516327 ~ 7516551 (+) True G220529
TU251609 lncRNA downstream 21880 7517202 ~ 7524528 (+) True G220510
XM_036967452.1 mRNA upstream 47162 7437011 ~ 7447882 (+) False LOC118945274
XM_021621564.2 mRNA upstream 137636 7348131 ~ 7357408 (+) False LOC110536044
XM_021589071.2 mRNA downstream 123046 7618368 ~ 7627967 (+) True LOC110508507
XM_036967633.1 mRNA downstream 445980 7941302 ~ 8086452 (+) True LOC110513974
XM_036967642.1 mRNA downstream 653085 8148407 ~ 8159396 (+) True efna1b
XM_036967655.1 mRNA downstream 675312 8170634 ~ 8176258 (+) False LOC110520790
XM_021598321.2 mRNA downstream 749906 8245228 ~ 8249653 (+) False LOC110520877
TU251574 other upstream 47167 7446369 ~ 7447877 (+) True LOC118945274
TU251531 other upstream 113481 7378258 ~ 7381563 (+) False G220445
TU251520 other upstream 129759 7363298 ~ 7365285 (+) False G220435
TU251521 other upstream 129759 7363298 ~ 7365285 (+) True G220435
TU251514 other upstream 130598 7363298 ~ 7364446 (+) False G220435
TU252485 other downstream 675385 8170707 ~ 8172223 (+) False LOC110520790
TU252560 other downstream 903749 8399071 ~ 8489067 (+) False G221299
TU252562 other downstream 903749 8399071 ~ 8489067 (+) False G221299
TU252563 other downstream 903749 8399071 ~ 8411530 (+) True G221299
TU252829 other downstream 1233655 8728977 ~ 8732478 (+) False G221514

Expression Profile