RNA id: TU252069


Basic Information

Item Value
RNA id TU252069
length 3776
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G220892
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7498513 ~ 7502503 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAACTGAACCTACAACTTTATTGGACAGGAACAAAGCTGTGAGCGGTTATTGGAGGACAACGCTGTCCTCTGAGTGGGGAATGGAGaataacacagagacaaagatagagggacagaggagagagagacaagaagaagggacagaggagagagcaaCAATAAGAaaggacagatgagagagagacaagaagaaaggacagatgagagagagacaagaagaagggacagaggagagagcaaCAATAAGAaaggacagatgagagagagacaagaagaaaggacagatgagagagagacaagaagaaaggacagaggagagagagaacaagaaaaaAGGACAGAGATAACAAGGgaatgaaggggagagagagaacaagaagaaaggacagaggagcgagagaacaagaagaaaggacagaggagagagagaacaagaagaaaggacagaggagagagagaacaagaagaaaggacagaggagagagagaataagaataaaggacagaggagagagagaacaagaagaaaggacagaggagagagagaacaagaagaaaggacagaggagagagagacaagaagaatggacagaggagagagagacaagaagaaaggacagaggagagagagaacaagggaatgaaggggaaagagagaacaggggaatgaaggggagagaaggaagaaaagagaggggtggagaaacggggaggagggaggggatggacAGCACTCTGTTTGCGTCACACCTCTACAGCCAGGTCCtgaagggaaagagaggactCCACTCCACAGCTCTCTGATAGGCTTTACACACTCCTGGGGCTCTCCTGGACTACCCCACTGTGAAAAGCCTGTGTCCCACAGAGTGACGCAAGGTCATGTAAGGGGATCCCTCAGGATGGCAGTTAACACttggctggtctctctctctctctctccagggaagTAAGCTCTCTTGCACATTGCGTCGGACAGATATGATAATGCAGTGGGcaatgagtacacacacacacacacatcggacATTAAGTAATTGAAACTGGCCCATTACTGTAATAACTATAGGTGGCTTGTGTTCtgacaattataataataatacagcatTACACACTGGAGAGAGTCAGCTACAGAGCACAACACAatctgagagagggaggacaggaggcggaaggaggagaggagagagtcagctaCAGAGCACAAAACAatctgagagagggaggacaggaggcggaaggaggagaggagagagtcagctaCAGAGCACAACACAatctgagagagggaggacaggagggggaaggaggagaggagcgagggggaaggagggaaggacaggaggagaggacagaagggggaaggaggagaggagagagtcagctaCAGAGCACAACACAatctgagagagggaggacaggagggggaaggaggagaggagcgagggggaagaagggaaggacaggaggagaggacaggagggggaaggaggagaggacaggagggggaaggaggagaggagagagtcagctaCAGAGCACAACACAatctgagagagggaggacaggagggggaaggaggagaggagagagggggaaggaggagaggacagggggtaaggagggaggacaggtgggggaaggagggaggacaggtgggggatggagggggaaagaggagaggagcgagggagaaggaggggaggacaggagggggaaggaggggaggagagaaggggaaggaggagagggcagggggggaaggaggggaggacatgatgaggaaggaggagaggagagagggagaagaaggggaggacaggaggggggaggagagagggaggaaaggaagagaggacagagtgagACACTGTCTTACTCTGATAATGATAATCACAGTGATGACAGAAATTAACATTTGTGCAAACATTCATAACACACAATAGCTTACATTTTGTGAGAAAACATCCTTATTCCAACAATACATATCATCTGTCAGTTCTATATTCGACCACCCAATTTTGTGCAATCATGGCTCAACTGATCTGtactaatctgtcgttctgcccctgaacaggcagttaacccactgttcctaggccgtcattgaaaataagaatttgttcttaactgacttgcctagttaaataaagtttaaataaataaaaaaaactgtaaaaagaGGGAATTTACTCCATCTTGGCTCAACCCAATCTCAGTTTCCCAGGAACTTACTGAATCTAGACTCATCCCATTGCAACTGTACCCTATGGCACAATCTGCTATTATCCCAATAGAGCTGTATACGCAGACATCCTACACCTTTATCTTTCTCTAAGGTTGAATCCCAAATCACCCCCTGCCCCTTCACCCCCTGCCTCTCCACCTCTGCCATTTACACAAGTGTACTAAAGCTGAGGGAGTGAAAAATTATGGGGGTGTAGGGGCTAATTAGATCCTCCTATAGCCACTTCGACCTAGCCAGCACGGATGCAGGCTTCAGAGCGCAGTGCTATCCCGACACTCACTGCTATATGTCTGAAGTTAGCACAATTGAATTGTAAAAAATGGAGAGGCGTGTCTAATTATATACCACGTGCATGTGTTTATGTCTGATTCAGAGACTGGTCCCGGTGGGTTTATTGATCCCATCGACACTCTCTGGAAGTCACCCTCGGAGCTTCGTCAACAACACGTGACAACGGAGGGAGTTGGTATTGGCAAGGGGGCGGTTTGGGATTCACTATAACTACTTCATCTCATTCCATCTAACTCTCTGTcaatatccctctctctctttcatctctctccttcacgATCTGTCTCTTCTACTCATATAGTGTTAGCGTGCACGTCACAGGCTGTGTAGTACAGGTAATATCACATTCTTGTTTAAAAGCGTAGAGAATCATACAACAAACCACTGCACCCTACCTTTCTCTCAGGAAGACACAGAGAAATCGCAATAATATTATATTCAAAGCTATACTGTGGTACACTGCTAGGCTATGGtaaaatatactgtactgtactatcagTTGGCTTAACAGAAGTGGCTTGGAAAAACAATTATGAACCTTGACAACCCCCCACTTGCCTTTACATTTTCCCGATTGGTTGACACAGTTTCCAATCAAGGTTCTGTTACTGAAGCATTAAGTTCTGTACCAGTTGAAGGTGCGACAATATACTCTCAGTAAGCTTGCACAGTCAGCTTGGAATGAAAAGCATTGATTGGCTGGCGTAGCGTTCTACAGGATGTCAAACAATTTAGAGATTGTCCTCTCTCCCACTGATTGGCTTCTGCTGCTTATCactcagagggagagaggagaggcataaCTCCACCTTCCTCTGGGAAAAAGGGAAGAGTTGTCCATCCATTTATCCCTCCTCTGGAAAAAAAAAAGATATTTCATACGATGTTGGTGTTAAGTTTAGTTCTTCAGTTCAGAACAGTTCAGTAGAAAGGCTATAAAGGTTAACAGGTGTGGCTCCTGTCCAATATAGTTCCACAGACTTAATAAAACCCACTTCCCCTGCTGGGCAGGTGCCTCCCTCCTGCCCCTGTCCTGCTGTGCTGATTGGGTCGGGGCGGTGTCCATCGATGCTGCTGGGCACCTGGTTGGTCAGCCATTGGTGTTGGTGATGGTCTTGGCAGTGTAGTTCTGGAACAGTGGCTGGAGGAACATCCCGACggttccagacacacacacaattataaaGATCCACAGGAAGAGACGGTCGATCACCATGGCAACATACTTCCAGTCCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252063 lncRNA downstream 3648 7494623 ~ 7494865 (-) True G220889
TU252051 lncRNA downstream 19045 7478146 ~ 7479468 (-) True G220879
TU251953 lncRNA downstream 90403 7406437 ~ 7408110 (-) False G220797
TU251954 lncRNA downstream 90403 7406437 ~ 7408110 (-) True G220797
TU251980 lncRNA downstream 158652 7339207 ~ 7339861 (-) True G220819
TU252072 lncRNA upstream 1830 7504333 ~ 7504614 (-) True G220894
TU252091 lncRNA upstream 32713 7535216 ~ 7535425 (-) True G220908
TU252029 lncRNA upstream 47170 7549673 ~ 7551927 (-) False LOC110508481
TU252030 lncRNA upstream 47170 7549673 ~ 7551927 (-) True LOC110508481
TU252032 lncRNA upstream 49679 7552182 ~ 7552852 (-) True G220866
XM_036967443.1 mRNA downstream 62318 7408252 ~ 7436195 (-) False LOC110520792
XM_036967433.1 mRNA downstream 104014 7365417 ~ 7394499 (-) True LOC110537383
XR_005040374.1 mRNA downstream 104015 7365417 ~ 7394498 (-) False LOC110537383
XM_036975430.1 mRNA downstream 155230 7323036 ~ 7343283 (-) True LOC110536068
XM_036967411.1 mRNA downstream 272437 7224126 ~ 7226076 (-) True LOC118945273
XM_021588963.2 mRNA upstream 3698 7506201 ~ 7510860 (-) True LOC110508441
XM_021588983.2 mRNA upstream 14692 7517195 ~ 7523801 (-) False LOC110508454
XM_036967476.1 mRNA upstream 14692 7517195 ~ 7523907 (-) False LOC110508454
XM_021589000.2 mRNA upstream 14692 7517195 ~ 7524541 (-) False LOC110508454
XM_021588991.2 mRNA upstream 14692 7517195 ~ 7524544 (-) False LOC110508454
TU251959 other downstream 62342 7428670 ~ 7436171 (-) False LOC110520792
TU251958 other downstream 62342 7428834 ~ 7436171 (-) True LOC110520792
TU251896 other downstream 297092 7176392 ~ 7201421 (-) True G220751
TU251306 other downstream 398343 7099338 ~ 7100170 (-) True G220261
TU251284 other downstream 414822 7082745 ~ 7083691 (-) False G220242
TU252079 other upstream 14697 7517200 ~ 7524492 (-) False LOC110508454
TU252080 other upstream 14697 7517200 ~ 7524492 (-) True LOC110508454
TU252088 other upstream 25523 7528026 ~ 7530317 (-) True LOC110508472
TU252033 other upstream 53884 7556387 ~ 7558636 (-) False LOC110508494
TU252035 other upstream 56436 7558939 ~ 7573472 (-) True LOC110508494