RNA id: TU251609


Basic Information

Item Value
RNA id TU251609
length 1252
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id G220510
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7517202 ~ 7524528 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACATTGCCATGGCATTTATTTCAACATGATAACAAACCATTTACTGTAGAAGTGTTGATTTAGAGTAGTTATACTAAAACATGTGAACTGTTAAacttaatgtaaaaaaaatgccttcataaagtatttaTAAGACCagtaacatggttataactgAGATGAAGATTGGTAGTGTAAGCATATAAAATATGTTGAGATGAAGTTAAGTCTGATTATGTAGTGATTATGTAGTGATATACAGCCAAGGGAGATTGACAGGTCTATGAGCCTCTATAGGTACATGGGGCCTTATGGCAGTGTTCTTCAATTCTGGCCCTGTGGTCACACACACTGTAATCAATCCCATCAAAGCCTTCACGCGTTTCCTCTGGTGTGTCAGTGCTGGAATGGAACTaaagcctgcacaccctgtgGGTCACTAGAACCAGGATTGAAGAACCCTGCCTTATAGACTGCATAAGACATCTTATAGAATGTCTATGAAGCCATATGTAGTTCCTATGAGGCAGGTGTGTTGTTGGCTGCAGTCCTCTGCTCGCTGAGGGTGTTTGCCACGTAGCCAATCAGAGTCATGTATTCCTGGAAGCTGACCTTCCCATCTTTGTTCTCGTCCAATCCCTTACGCATCTCCTTCACTGCAGAGGAACTCTCTGTTCCCTAtgaggtgagagggggagagagggagagagtggggacagAGGAAGAGTCTATCATTAAAGATTGCTTCCCCTAGAACACCTGGTGCTGATTTGCATTAGGACTAGGGTTGAGGCTCGGGTGTAACCGGGACGCGAACACGAACCTAGGGTCACGGCTCGGGTTTAACCGGGACGCGGACACAAACCTAGGGTCATGGCTCGGGTTTAACCAGGACACAAATCTAGGGTCAGAGTTGAGGAGTAGTGATACAAGGATAGGTGGAACTTACAGTCATGACGTTGCCGAGCTGTTTATTGACGAGGCCCTGGAAGTCCTTATCTCCGAGACTGCCCTTCCCTTTGGCAGACTTCAGATACACTTCTACCACTGTCTGGATGGCCGACTCCATAGGTTAGATTGTGAATGAGAAAAAAACAAATGTGCTCGATGTCAATTATCTTGTCCaggctctctctgtgtctcaggcACTCTTCTCAAGGCTCAAACTTGATCAACTAGTTGCACTCAAAAGAATCTCTTCCGTGATAGAAAATGTTCTTCACCAAACTTTTTTGTATTGTGTCACAGAAGGGCGTGTGCCTGGGAAAGGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251636 lncRNA upstream 651 7516327 ~ 7516551 (+) True G220529
TU251629 lncRNA upstream 4164 7512051 ~ 7513038 (+) False G220527
TU251633 lncRNA upstream 4164 7512051 ~ 7513038 (+) False G220527
TU251627 lncRNA upstream 4164 7512183 ~ 7513038 (+) True G220527
TU251618 lncRNA upstream 21880 7495044 ~ 7495322 (+) True G220518
TU251658 lncRNA downstream 7020 7531548 ~ 7532551 (+) True G220542
TU251661 lncRNA downstream 12132 7536660 ~ 7537143 (+) True G220545
TU251672 lncRNA downstream 20675 7545203 ~ 7545412 (+) True G220555
TU251664 lncRNA downstream 27632 7552160 ~ 7552848 (+) True G220548
TU251676 lncRNA downstream 32754 7557282 ~ 7557818 (+) True G220559
XM_036967459.1 mRNA upstream 16665 7460440 ~ 7500537 (+) True LOC110508431
XM_036967452.1 mRNA upstream 69320 7437011 ~ 7447882 (+) False LOC118945274
XM_021621583.2 mRNA upstream 159794 7348131 ~ 7357408 (+) False LOC110536044
XM_021589071.2 mRNA downstream 93840 7618368 ~ 7627967 (+) True LOC110508507
XM_036967633.1 mRNA downstream 416774 7941302 ~ 8086452 (+) True LOC110513974
XM_036967642.1 mRNA downstream 623879 8148407 ~ 8159396 (+) True efna1b
XM_036967655.1 mRNA downstream 646106 8170634 ~ 8176258 (+) False LOC110520790
XM_021598321.2 mRNA downstream 720700 8245228 ~ 8249653 (+) False LOC110520877
TU251574 other upstream 69325 7446369 ~ 7447877 (+) True LOC118945274
TU251531 other upstream 135639 7378258 ~ 7381563 (+) False G220445
TU251520 other upstream 151917 7363298 ~ 7365285 (+) False G220435
TU251521 other upstream 151917 7363298 ~ 7365285 (+) True G220435
TU251514 other upstream 152756 7363298 ~ 7364446 (+) False G220435
TU252485 other downstream 646179 8170707 ~ 8172223 (+) False LOC110520790
TU252560 other downstream 874543 8399071 ~ 8489067 (+) False G221299
TU252562 other downstream 874543 8399071 ~ 8489067 (+) False G221299
TU252563 other downstream 874543 8399071 ~ 8411530 (+) True G221299
TU252829 other downstream 1204449 8728977 ~ 8732478 (+) False G221514

Expression Profile